Analysis of interatomic Contacts of Structural Units in PDB entry:
3D8B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D8B entry

There are 2 chains in PDB entry 3D8B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 374LYS 674
B
 LEU 379CYS 672
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3D8B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
380 391Right-handed alpha
Helix 2
2
A
399 403Right-handed 310
Helix 3
3
A
406 417Right-handed alpha
Helix 4
4
A
417 423Right-handed alpha
Helix 5
5
A
428 432Right-handed 310
Helix 6
6
A
446 458Right-handed alpha
Helix 7
7
A
468 471Right-handed 310
Helix 8
8
A
476 492Right-handed alpha
Helix 9
9
A
501 506Right-handed alpha
Helix 10
10
A
515 530Right-handed alpha
Helix 11
11
A
547 551Right-handed 310
Helix 12
12
A
552 557Right-handed alpha
Helix 13
13
A
569 583Right-handed alpha
Helix 14
14
A
589 600Right-handed alpha
Helix 15
15
A
604 617Right-handed alpha
Helix 16
16
A
617 623Right-handed alpha
Helix 17
17
A
640 652Right-handed alpha
Helix 18
18
A
653 655Right-handed 310
Helix 19
19
A
659 671Right-handed alpha
Helix 20
20
B
380 391Right-handed alpha
Helix 21
21
B
399 403Right-handed 310
Helix 22
22
B
406 417Right-handed alpha
Helix 23
23
B
417 423Right-handed alpha
Helix 24
24
B
446 458Right-handed alpha
Helix 25
25
B
468 471Right-handed 310
Helix 26
26
B
477 492Right-handed alpha
Helix 27
27
B
502 507Right-handed alpha
Helix 28
28
B
517 531Right-handed alpha
Helix 29
29
B
547 551Right-handed 310
Helix 30
30
B
552 559Right-handed alpha
Helix 31
31
B
569 582Right-handed alpha
Helix 32
32
B
589 600Right-handed alpha
Helix 33
33
B
604 623Right-handed alpha
Helix 34
34
B
632 636Right-handed 310
Helix 35
35
B
640 652Right-handed alpha
Helix 36
36
B
653 655Right-handed 310
Helix 37
37
B
659 671Right-handed alpha
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There are 2 sheets in PDB entry 3D8B. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
461 466first strand
Strand 2
A
495 500parallel
Strand 3
A
539 545parallel
Strand 4
A
436 440parallel
Strand 5
A
561 564parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
461 466first strand
Strand 2
B
495 500parallel
Strand 3
B
539 545parallel
Strand 4
B
436 440parallel
Strand 5
B
561 564parallel
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