Analysis of interatomic Contacts of Structural Units in PDB entry:
3D8E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D8E entry

There are 4 chains in PDB entry 3D8E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 368GLU 507
B
 GLY 366GLU 507
C
 LYS 368GLU 507
D
 GLY 366GLU 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3D8E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
381 386Right-handed 310
Helix 2
2
A
389 402Right-handed alpha
Helix 3
3
A
488 504Right-handed alpha
Helix 4
4
B
381 386Right-handed 310
Helix 5
5
B
388 400Right-handed alpha
Helix 6
6
B
446 448Right-handed 310
Helix 7
7
B
487 505Right-handed alpha
Helix 8
8
C
389 402Right-handed alpha
Helix 9
9
C
487 505Right-handed alpha
Helix 10
10
D
382 386Right-handed 310
Helix 11
11
D
388 401Right-handed alpha
Helix 12
12
D
446 448Right-handed 310
Helix 13
13
D
487 505Right-handed alpha
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There are 4 sheets in PDB entry 3D8E. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 446first strand
Strand 2
A
430 435anti-parallel
Strand 3
A
421 427anti-parallel
Strand 4
A
369 380anti-parallel
Strand 5
B
368 380anti-parallel
Strand 6
B
421 427anti-parallel
Strand 7
B
430 434anti-parallel
Strand 8
B
441 443anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
450 455first strand
Strand 2
A
464 470anti-parallel
Strand 3
A
477 484anti-parallel
Strand 4
A
369 380anti-parallel
Strand 5
B
368 380anti-parallel
Strand 6
B
477 484anti-parallel
Strand 7
B
464 470anti-parallel
Strand 8
B
450 455anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
441 446first strand
Strand 2
C
430 434anti-parallel
Strand 3
C
422 427anti-parallel
Strand 4
C
369 379anti-parallel
Strand 5
D
368 379anti-parallel
Strand 6
D
421 427anti-parallel
Strand 7
D
430 434anti-parallel
Strand 8
D
441 443anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
450 455first strand
Strand 2
C
464 470anti-parallel
Strand 3
C
477 484anti-parallel
Strand 4
C
369 379anti-parallel
Strand 5
D
368 379anti-parallel
Strand 6
D
477 484anti-parallel
Strand 7
D
464 470anti-parallel
Strand 8
D
450 455anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il