Analysis of interatomic Contacts of Structural Units in PDB entry:
3D8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D8F entry

There are 4 chains in PDB entry 3D8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 366GLU 507
B
 GLY 366HIS 508
C
 GLY 366GLU 507
D
 GLY 366GLU 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 3D8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
382 386Right-handed 310
Helix 2
2
A
389 402Right-handed alpha
Helix 3
3
A
488 504Right-handed alpha
Helix 4
4
B
389 399Right-handed alpha
Helix 5
5
B
448 450Right-handed 310
Helix 6
6
B
488 504Right-handed alpha
Helix 7
7
C
381 386Right-handed alpha
Helix 8
8
C
389 402Right-handed alpha
Helix 9
9
C
487 503Right-handed alpha
Helix 10
10
D
389 400Right-handed alpha
Helix 11
11
D
448 450Right-handed 310
Helix 12
12
D
487 504Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 3D8F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 446first strand
Strand 2
A
430 435anti-parallel
Strand 3
A
422 427anti-parallel
Strand 4
A
368 379anti-parallel
Strand 5
B
368 376anti-parallel
Strand 6
B
477 484anti-parallel
Strand 7
B
379 380anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
450 455first strand
Strand 2
A
464 470anti-parallel
Strand 3
A
477 484anti-parallel
Strand 4
A
368 379anti-parallel
Strand 5
B
368 376anti-parallel
Strand 6
B
421 427anti-parallel
Strand 7
B
430 434anti-parallel
Strand 8
B
441 446anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 455first strand
Strand 2
B
464 470anti-parallel
Strand 3
B
477 484anti-parallel
Strand 4
B
368 376anti-parallel
Strand 5
B
421 427anti-parallel
Strand 6
B
430 434anti-parallel
Strand 7
B
441 446anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
441 446first strand
Strand 2
C
430 434anti-parallel
Strand 3
C
422 427anti-parallel
Strand 4
C
368 379anti-parallel
Strand 5
D
368 379anti-parallel
Strand 6
D
421 427anti-parallel
Strand 7
D
430 434anti-parallel
Strand 8
D
441 446anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
450 455first strand
Strand 2
C
464 470anti-parallel
Strand 3
C
477 484anti-parallel
Strand 4
C
368 379anti-parallel
Strand 5
D
368 379anti-parallel
Strand 6
D
477 484anti-parallel
Strand 7
D
464 470anti-parallel
Strand 8
D
452 454anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il