Analysis of interatomic Contacts of Structural Units in PDB entry:
3D8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D8H entry

There are 2 chains in PDB entry 3D8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 20ILE 248
B
 PRO 16GLU 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3D8H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
48 65Right-handed alpha
Helix 2
2
A
77 92Right-handed alpha
Helix 3
3
A
102 105Right-handed 310
Helix 4
4
A
109 113Right-handed 310
Helix 5
5
A
116 124Right-handed alpha
Helix 6
6
A
125 135Right-handed alpha
Helix 7
7
A
150 158Right-handed 310
Helix 8
8
A
161 165Right-handed 310
Helix 9
9
A
170 185Right-handed alpha
Helix 10
10
A
185 192Right-handed alpha
Helix 11
11
A
201 214Right-handed alpha
Helix 12
12
A
216 221Right-handed alpha
Helix 13
13
B
31 36Right-handed alpha
Helix 14
14
B
48 65Right-handed alpha
Helix 15
15
B
77 91Right-handed alpha
Helix 16
16
B
102 105Right-handed 310
Helix 17
17
B
109 113Right-handed 310
Helix 18
18
B
118 124Right-handed alpha
Helix 19
19
B
125 135Right-handed alpha
Helix 20
20
B
150 158Right-handed 310
Helix 21
21
B
161 165Right-handed 310
Helix 22
22
B
170 185Right-handed alpha
Helix 23
23
B
185 192Right-handed alpha
Helix 24
24
B
201 214Right-handed alpha
Helix 25
25
B
216 222Right-handed alpha
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There are 2 sheets in PDB entry 3D8H. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 100first strand
Strand 2
A
71 74parallel
Strand 3
A
196 200parallel
Strand 4
A
21 27parallel
Strand 5
A
231 235anti-parallel
Strand 6
A
241 246anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 100first strand
Strand 2
B
71 74parallel
Strand 3
B
196 200parallel
Strand 4
B
21 27parallel
Strand 5
B
231 235anti-parallel
Strand 6
B
241 246anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il