Analysis of interatomic Contacts of Structural Units in PDB entry:
3D8P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D8P entry

There are 2 chains in PDB entry 3D8P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LYS 161
B
 ALA 2LYS 161
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3D8P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 11Right-handed 310
Helix 2
2
A
12 26Right-handed alpha
Helix 3
3
A
33 41Right-handed 310
Helix 4
4
A
42 47Right-handed alpha
Helix 5
5
A
87 90Right-handed 310
Helix 6
6
A
93 109Right-handed alpha
Helix 7
7
A
122 132Right-handed alpha
Helix 8
8
A
138 142Right-handed 310
Helix 9
9
B
9 11Right-handed 310
Helix 10
10
B
12 26Right-handed alpha
Helix 11
11
B
33 41Right-handed 310
Helix 12
12
B
42 47Right-handed alpha
Helix 13
13
B
87 90Right-handed 310
Helix 14
14
B
93 109Right-handed alpha
Helix 15
15
B
122 131Right-handed alpha
Helix 16
16
B
138 142Right-handed 310
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There are 2 sheets in PDB entry 3D8P. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
53 58anti-parallel
Strand 3
A
64 72anti-parallel
Strand 4
A
77 85anti-parallel
Strand 5
A
113 118parallel
Strand 6
A
154 159anti-parallel
Strand 7
A
135 137anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
53 58anti-parallel
Strand 3
B
64 72anti-parallel
Strand 4
B
77 85anti-parallel
Strand 5
B
113 118parallel
Strand 6
B
154 159anti-parallel
Strand 7
B
135 137anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il