Analysis of interatomic Contacts of Structural Units in PDB entry:
3D8R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D8R entry

There is 1 chain in PDB entry 3D8R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR -1VAL 252
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3D8R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 22Right-handed alpha
Helix 2
2
A
40 49Right-handed alpha
Helix 3
3
A
59 73Right-handed alpha
Helix 4
4
A
77 84Right-handed alpha
Helix 5
5
A
90 100Right-handed alpha
Helix 6
6
A
111 119Right-handed 310
Helix 7
7
A
135 145Right-handed alpha
Helix 8
8
A
160 173Right-handed alpha
Helix 9
9
A
183 194Right-handed alpha
Helix 10
10
A
196 207Right-handed alpha
Helix 11
11
A
214 224Right-handed alpha
Helix 12
12
A
236 251Right-handed alpha
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There are 3 sheets in PDB entry 3D8R. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
2 5parallel
Strand 3
A
178 181parallel
Strand 4
A
209 213parallel
Strand 5
A
230 232parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 37first strand
Strand 2
A
155 159anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
85 88parallel
Strand 3
A
54 57parallel
Strand 4
A
125 129parallel
Strand 5
A
148 152parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il