Analysis of interatomic Contacts of Structural Units in PDB entry:
3D8U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D8U entry

There are 2 chains in PDB entry 3D8U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 71ALA 340
B
 TYR 71ASN 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3D8U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
82 99Right-handed alpha
Helix 2
2
A
111 124Right-handed alpha
Helix 3
3
A
138 149Right-handed alpha
Helix 4
4
A
170 184Right-handed alpha
Helix 5
5
A
199 216Right-handed alpha
Helix 6
6
A
231 244Right-handed alpha
Helix 7
7
A
256 270Right-handed alpha
Helix 8
8
A
286 291Right-handed alpha
Helix 9
9
A
302 319Right-handed alpha
Helix 10
10
B
82 100Right-handed alpha
Helix 11
11
B
111 124Right-handed alpha
Helix 12
12
B
138 148Right-handed alpha
Helix 13
13
B
170 185Right-handed alpha
Helix 14
14
B
199 216Right-handed alpha
Helix 15
15
B
231 246Right-handed alpha
Helix 16
16
B
256 271Right-handed alpha
Helix 17
17
B
286 291Right-handed alpha
Helix 18
18
B
302 319Right-handed alpha
Helix 19
19
B
336 340Right-handed 310
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There are 6 sheets in PDB entry 3D8U. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
A
72 77parallel
Strand 3
A
106 107parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
A
72 77parallel
Strand 3
A
130 133parallel
Strand 4
A
152 155parallel
Strand 5
A
165 167parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 225first strand
Strand 2
A
190 194parallel
Strand 3
A
251 254parallel
Strand 4
A
279 282parallel
Strand 5
A
297 300parallel
Strand 6
A
332 334anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 107first strand
Strand 2
B
73 77parallel
Strand 3
B
130 133parallel
Strand 4
B
152 155parallel
Strand 5
B
165 167parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 226first strand
Strand 2
B
190 195parallel
Strand 3
B
251 254parallel
Strand 4
B
279 282parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
298 300first strand
Strand 2
B
332 334anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il