Analysis of interatomic Contacts of Structural Units in PDB entry:
3D8X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D8X entry

There are 2 chains in PDB entry 3D8X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2GLU 319
B
 VAL 2GLU 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3D8X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 25Right-handed alpha
Helix 2
2
A
36 40Right-handed 310
Helix 3
3
A
44 49Right-handed 310
Helix 4
4
A
63 78Right-handed alpha
Helix 5
5
A
130 135Right-handed alpha
Helix 6
6
A
142 147Right-handed alpha
Helix 7
7
A
149 153Right-handed 310
Helix 8
8
A
163 174Right-handed alpha
Helix 9
9
A
192 202Right-handed alpha
Helix 10
10
A
254 258Right-handed 310
Helix 11
11
A
287 291Right-handed 310
Helix 12
12
A
296 319Right-handed alpha
Helix 13
13
B
12 25Right-handed alpha
Helix 14
14
B
36 40Right-handed 310
Helix 15
15
B
44 49Right-handed 310
Helix 16
16
B
64 78Right-handed alpha
Helix 17
17
B
130 135Right-handed alpha
Helix 18
18
B
142 147Right-handed alpha
Helix 19
19
B
149 153Right-handed 310
Helix 20
20
B
163 174Right-handed alpha
Helix 21
21
B
192 202Right-handed alpha
Helix 22
22
B
254 258Right-handed 310
Helix 23
23
B
287 291Right-handed 310
Helix 24
24
B
296 319Right-handed alpha
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There are 11 sheets in PDB entry 3D8X. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
30 32parallel
Strand 3
A
3 9parallel
Strand 4
A
110 117parallel
Strand 5
A
97 101anti-parallel
Strand 6
A
87 91anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
30 32parallel
Strand 3
A
3 9parallel
Strand 4
A
110 117parallel
Strand 5
A
283 285parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 123first strand
Strand 2
A
250 252anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
243 246parallel
Strand 3
A
156 160parallel
Strand 4
A
179 183parallel
Strand 5
A
205 208parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 218first strand
Strand 2
A
223 230anti-parallel
Strand 3
A
235 239anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 83first strand
Strand 2
B
30 32parallel
Strand 3
B
3 9parallel
Strand 4
B
110 117parallel
Strand 5
B
97 101anti-parallel
Strand 6
B
87 91anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 83first strand
Strand 2
B
30 32parallel
Strand 3
B
3 9parallel
Strand 4
B
110 117parallel
Strand 5
B
283 285parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 52first strand
Strand 2
B
62 63anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 123first strand
Strand 2
B
250 252anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 140first strand
Strand 2
B
243 246parallel
Strand 3
B
156 160parallel
Strand 4
B
179 183parallel
Strand 5
B
205 208parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 218first strand
Strand 2
B
223 230anti-parallel
Strand 3
B
235 240anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il