Analysis of interatomic Contacts of Structural Units in PDB entry:
3D94


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D94 entry

There are 2 chains in PDB entry 3D94 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 956CYS 1111
A
 VAL 1113ASN 1255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 3D94. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
965 967Right-handed 310
Helix 2
2
A
1010 1022Right-handed alpha
Helix 3
3
A
1023 1027Right-handed 310
Helix 4
4
A
1056 1063Right-handed alpha
Helix 5
5
A
1078 1099Right-handed alpha
Helix 6
6
A
1107 1109Right-handed 310
Helix 7
7
A
1124 1128Right-handed 310
Helix 8
8
A
1145 1149Right-handed 310
Helix 9
9
A
1150 1157Right-handed alpha
Helix 10
10
A
1160 1177Right-handed alpha
Helix 11
11
A
1187 1197Right-handed alpha
Helix 12
12
A
1208 1219Right-handed alpha
Helix 13
13
A
1222 1226Right-handed 310
Helix 14
14
A
1228 1235Right-handed alpha
Helix 15
15
A
1236 1240Right-handed 310
Helix 16
16
A
1241 1242Right-handed 310
Helix 17
17
A
1243 1248Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3D94. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
969 977first strand
Strand 2
A
982 989anti-parallel
Strand 3
A
997 1005anti-parallel
Strand 4
A
1045 1050anti-parallel
Strand 5
A
1035 1039anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1111 1113first strand
Strand 2
A
1119 1121anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il