Analysis of interatomic Contacts of Structural Units in PDB entry:
3D98


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D98 entry

There is 1 chain in PDB entry 3D98 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ALA 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3D98. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 21Right-handed 310
Helix 2
2
A
25 28Right-handed 310
Helix 3
3
A
36 46Right-handed alpha
Helix 4
4
A
59 74Right-handed alpha
Helix 5
5
A
88 98Right-handed alpha
Helix 6
6
A
119 133Right-handed alpha
Helix 7
7
A
166 170Right-handed 310
Helix 8
8
A
173 177Right-handed 310
Helix 9
9
A
188 197Right-handed alpha
Helix 10
10
A
211 220Right-handed alpha
Helix 11
11
A
231 235Right-handed 310
Helix 12
12
A
240 262Right-handed alpha
Helix 13
13
A
268 270Right-handed 310
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There are 7 sheets in PDB entry 3D98. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 82first strand
Strand 2
A
51 56parallel
Strand 3
A
8 12parallel
Strand 4
A
108 112parallel
Strand 5
A
179 187anti-parallel
Strand 6
A
137 143anti-parallel
Strand 7
A
224 228parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
34 35anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 155first strand
Strand 2
A
161 165anti-parallel
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There are 12 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 266first strand
Strand 2
A
285 286parallel
Strand 3
A
303 304parallel
Strand 4
A
320 321parallel
Strand 5
A
336 337parallel
Strand 6
A
272 274first strand
Strand 7
A
290 293parallel
Strand 8
A
308 315parallel
Strand 9
A
324 331parallel
Strand 10
A
347 349parallel
Strand 11
A
365 366parallel
Strand 12
A
382 383parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 379first strand
Strand 2
A
354 362parallel
Strand 3
A
336 337parallel
Strand 4
A
341 343first strand
Strand 5
A
324 331parallel
Strand 6
A
347 349parallel
Strand 7
A
365 366parallel
Strand 8
A
382 383parallel
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There are 18 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 379first strand
Strand 2
A
354 362parallel
Strand 3
A
336 337parallel
Strand 4
A
272 274first strand
Strand 5
A
290 293parallel
Strand 6
A
308 315parallel
Strand 7
A
324 331parallel
Strand 8
A
347 349parallel
Strand 9
A
365 366parallel
Strand 10
A
382 383parallel
Strand 11
A
371 379first strand
Strand 12
A
354 362parallel
Strand 13
A
336 337parallel
Strand 14
A
272 274first strand
Strand 15
A
290 293parallel
Strand 16
A
308 315parallel
Strand 17
A
297 298parallel
Strand 18
A
279 280parallel
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There are 10 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 266first strand
Strand 2
A
285 286parallel
Strand 3
A
303 304parallel
Strand 4
A
320 321parallel
Strand 5
A
336 337parallel
Strand 6
A
354 362parallel
Strand 7
A
341 343parallel
Strand 8
A
308 315first strand
Strand 9
A
297 298parallel
Strand 10
A
279 280parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il