Analysis of interatomic Contacts of Structural Units in PDB entry:
3D9B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D9B entry

There is 1 chain in PDB entry 3D9B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 1045
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 3D9B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 6Right-handed alpha
Helix 2
2
A
8 30Right-handed alpha
Helix 3
3
A
53 59Right-handed alpha
Helix 4
4
A
61 67Right-handed alpha
Helix 5
5
A
99 113Right-handed alpha
Helix 6
6
A
114 118Right-handed 310
Helix 7
7
A
119 126Right-handed alpha
Helix 8
8
A
150 162Right-handed alpha
Helix 9
9
A
162 169Right-handed alpha
Helix 10
10
A
189 196Right-handed alpha
Helix 11
11
A
199 211Right-handed alpha
Helix 12
12
A
242 248Right-handed alpha
Helix 13
13
A
300 312Right-handed alpha
Helix 14
14
A
330 359Right-handed alpha
Helix 15
15
A
365 385Right-handed alpha
Helix 16
16
A
391 424Right-handed alpha
Helix 17
17
A
426 454Right-handed alpha
Helix 18
18
A
455 458Right-handed 310
Helix 19
19
A
460 487Right-handed alpha
Helix 20
20
A
487 497Right-handed alpha
Helix 21
21
A
511 537Right-handed alpha
Helix 22
22
A
539 559Right-handed alpha
Helix 23
23
A
583 601Right-handed alpha
Helix 24
24
A
633 637Right-handed 310
Helix 25
25
A
639 642Right-handed 310
Helix 26
26
A
643 656Right-handed alpha
Helix 27
27
A
692 707Right-handed alpha
Helix 28
28
A
732 740Right-handed alpha
Helix 29
29
A
742 756Right-handed alpha
Helix 30
30
A
777 780Right-handed 310
Helix 31
31
A
782 788Right-handed 310
Helix 32
32
A
801 804Right-handed alpha
Helix 33
33
A
836 848Right-handed alpha
Helix 34
34
A
861 866Right-handed alpha
Helix 35
35
A
872 893Right-handed alpha
Helix 36
36
A
896 903Right-handed alpha
Helix 37
37
A
904 918Right-handed alpha
Helix 38
38
A
924 955Right-handed alpha
Helix 39
39
A
959 987Right-handed alpha
Helix 40
40
A
996 1033Right-handed alpha
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There are 12 sheets in PDB entry 3D9B. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
128 131anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
93 94anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
81 83anti-parallel
Strand 3
A
815 819anti-parallel
Strand 4
A
822 830anti-parallel
Strand 5
A
714 718anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
81 83anti-parallel
Strand 3
A
815 819anti-parallel
Strand 4
A
822 830anti-parallel
Strand 5
A
680 686anti-parallel
Strand 6
A
855 859anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 178first strand
Strand 2
A
284 291anti-parallel
Strand 3
A
138 144anti-parallel
Strand 4
A
321 328anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 178first strand
Strand 2
A
284 291anti-parallel
Strand 3
A
278 281anti-parallel
Strand 4
A
606 613anti-parallel
Strand 5
A
624 631anti-parallel
Strand 6
A
571 577anti-parallel
Strand 7
A
662 666anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 272first strand
Strand 2
A
182 188anti-parallel
Strand 3
A
768 775parallel
Strand 4
A
757 758anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 272first strand
Strand 2
A
182 188anti-parallel
Strand 3
A
768 775parallel
Strand 4
A
762 763anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 219first strand
Strand 2
A
232 233anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 253first strand
Strand 2
A
259 261anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
726 731first strand
Strand 2
A
805 810anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
790 792first strand
Strand 2
A
798 800anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il