Analysis of interatomic Contacts of Structural Units in PDB entry:
3DA8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DA8 entry

There are 2 chains in PDB entry 3DA8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3GLY 215
B
 PRO 4ARG 210
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3DA8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 33Right-handed alpha
Helix 2
2
A
50 59Right-handed alpha
Helix 3
3
A
67 71Right-handed 310
Helix 4
4
A
73 87Right-handed alpha
Helix 5
5
A
103 111Right-handed alpha
Helix 6
6
A
129 138Right-handed alpha
Helix 7
7
A
171 198Right-handed alpha
Helix 8
8
B
23 33Right-handed alpha
Helix 9
9
B
50 59Right-handed alpha
Helix 10
10
B
67 71Right-handed 310
Helix 11
11
B
73 87Right-handed alpha
Helix 12
12
B
103 111Right-handed alpha
Helix 13
13
B
129 138Right-handed alpha
Helix 14
14
B
171 198Right-handed alpha
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There are 4 sheets in PDB entry 3DA8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
199 202anti-parallel
Strand 3
A
205 208anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
39 46parallel
Strand 3
A
13 19parallel
Strand 4
A
92 97parallel
Strand 5
A
114 118parallel
Strand 6
A
141 148anti-parallel
Strand 7
A
158 165anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
199 202anti-parallel
Strand 3
B
205 208anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 65first strand
Strand 2
B
39 46parallel
Strand 3
B
13 19parallel
Strand 4
B
92 97parallel
Strand 5
B
114 118parallel
Strand 6
B
141 148anti-parallel
Strand 7
B
158 165anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il