Analysis of interatomic Contacts of Structural Units in PDB entry:
3DBE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DBE entry

There is 1 chain in PDB entry 3DBE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 24ARG 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3DBE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
77 94Right-handed alpha
Helix 2
2
A
123 132Right-handed alpha
Helix 3
3
A
135 156Right-handed alpha
Helix 4
4
A
164 166Right-handed 310
Helix 5
5
A
205 210Right-handed alpha
Helix 6
6
A
217 233Right-handed alpha
Helix 7
7
A
241 252Right-handed alpha
Helix 8
8
A
261 272Right-handed alpha
Helix 9
9
A
275 279Right-handed 310
Helix 10
10
A
281 287Right-handed alpha
Helix 11
11
A
288 294Right-handed alpha
Helix 12
12
A
301 306Right-handed 310
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There are 3 sheets in PDB entry 3DBE. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
38 48anti-parallel
Strand 3
A
51 58anti-parallel
Strand 4
A
64 71anti-parallel
Strand 5
A
111 117anti-parallel
Strand 6
A
102 107anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 159first strand
Strand 2
A
185 186anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 170first strand
Strand 2
A
176 178anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il