Analysis of interatomic Contacts of Structural Units in PDB entry:
3DBG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DBG entry

There are 2 chains in PDB entry 3DBG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 22HIS 462
B
 ARG 22HIS 462
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3DBG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 43Right-handed alpha
Helix 2
2
A
43 52Right-handed alpha
Helix 3
3
A
53 55Right-handed 310
Helix 4
4
A
72 82Right-handed alpha
Helix 5
5
A
116 118Right-handed 310
Helix 6
6
A
119 124Right-handed alpha
Helix 7
7
A
131 146Right-handed alpha
Helix 8
8
A
154 171Right-handed alpha
Helix 9
9
A
176 193Right-handed alpha
Helix 10
10
A
219 235Right-handed alpha
Helix 11
11
A
243 249Right-handed alpha
Helix 12
12
A
260 293Right-handed alpha
Helix 13
13
A
293 309Right-handed alpha
Helix 14
14
A
314 319Right-handed alpha
Helix 15
15
A
321 335Right-handed alpha
Helix 16
16
A
365 371Right-handed alpha
Helix 17
17
A
383 387Right-handed 310
Helix 18
18
A
388 393Right-handed alpha
Helix 19
19
A
412 430Right-handed alpha
Helix 20
20
B
34 43Right-handed alpha
Helix 21
21
B
43 52Right-handed alpha
Helix 22
22
B
72 82Right-handed alpha
Helix 23
23
B
116 118Right-handed 310
Helix 24
24
B
119 124Right-handed alpha
Helix 25
25
B
131 146Right-handed alpha
Helix 26
26
B
154 171Right-handed alpha
Helix 27
27
B
176 193Right-handed alpha
Helix 28
28
B
219 235Right-handed alpha
Helix 29
29
B
243 249Right-handed alpha
Helix 30
30
B
261 293Right-handed alpha
Helix 31
31
B
293 309Right-handed alpha
Helix 32
32
B
314 319Right-handed alpha
Helix 33
33
B
321 335Right-handed alpha
Helix 34
34
B
365 371Right-handed alpha
Helix 35
35
B
383 387Right-handed 310
Helix 36
36
B
388 393Right-handed alpha
Helix 37
37
B
412 430Right-handed alpha
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There are 8 sheets in PDB entry 3DBG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
57 62parallel
Strand 3
A
65 70anti-parallel
Strand 4
A
361 364parallel
Strand 5
A
341 344anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 153first strand
Strand 2
A
455 460anti-parallel
Strand 3
A
431 435anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 351first strand
Strand 2
A
354 356anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 445first strand
Strand 2
A
449 453anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 27first strand
Strand 2
B
57 62parallel
Strand 3
B
65 70anti-parallel
Strand 4
B
361 364parallel
Strand 5
B
341 344anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 153first strand
Strand 2
B
455 460anti-parallel
Strand 3
B
431 435anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
349 351first strand
Strand 2
B
354 356anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
440 445first strand
Strand 2
B
449 453anti-parallel
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