Analysis of interatomic Contacts of Structural Units in PDB entry:
3DBM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DBM entry

There is 1 chain in PDB entry 3DBM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 6SER 472
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3DBM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 32Right-handed alpha
Helix 2
2
A
34 47Right-handed alpha
Helix 3
3
A
76 81Right-handed 310
Helix 4
4
A
99 104Right-handed 310
Helix 5
5
A
108 112Right-handed 310
Helix 6
6
A
116 132Right-handed alpha
Helix 7
7
A
136 160Right-handed alpha
Helix 8
8
A
164 182Right-handed alpha
Helix 9
9
A
184 188Right-handed 310
Helix 10
10
A
194 207Right-handed alpha
Helix 11
11
A
208 210Right-handed 310
Helix 12
12
A
215 223Right-handed alpha
Helix 13
13
A
229 246Right-handed alpha
Helix 14
14
A
248 258Right-handed alpha
Helix 15
15
A
261 275Right-handed alpha
Helix 16
16
A
276 294Right-handed alpha
Helix 17
17
A
297 314Right-handed alpha
Helix 18
18
A
320 325Right-handed alpha
Helix 19
19
A
327 341Right-handed alpha
Helix 20
20
A
376 380Right-handed alpha
Helix 21
21
A
398 408Right-handed 310
Helix 22
22
A
428 445Right-handed alpha
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There are 3 sheets in PDB entry 3DBM. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
362 366parallel
Strand 3
A
355 359anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 55first strand
Strand 2
A
67 71anti-parallel
Strand 3
A
371 375parallel
Strand 4
A
346 351anti-parallel
Strand 5
A
86 87anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
464 469anti-parallel
Strand 3
A
449 453anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il