Analysis of interatomic Contacts of Structural Units in PDB entry:
3DBP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DBP entry

There are 2 chains in PDB entry 3DBP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 34GLY 290
B
 LYS 34GLY 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 3DBP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 42Right-handed alpha
Helix 2
2
A
48 62Right-handed alpha
Helix 3
3
A
73 85Right-handed alpha
Helix 4
4
A
86 88Right-handed 310
Helix 5
5
A
94 98Right-handed 310
Helix 6
6
A
102 117Right-handed alpha
Helix 7
7
A
129 139Right-handed alpha
Helix 8
8
A
143 148Right-handed alpha
Helix 9
9
A
159 170Right-handed alpha
Helix 10
10
A
191 204Right-handed alpha
Helix 11
11
A
245 251Right-handed alpha
Helix 12
12
A
261 266Right-handed alpha
Helix 13
13
A
269 290Right-handed alpha
Helix 14
14
B
37 42Right-handed alpha
Helix 15
15
B
48 62Right-handed alpha
Helix 16
16
B
73 85Right-handed alpha
Helix 17
17
B
86 88Right-handed 310
Helix 18
18
B
94 98Right-handed 310
Helix 19
19
B
102 117Right-handed alpha
Helix 20
20
B
129 139Right-handed alpha
Helix 21
21
B
143 148Right-handed alpha
Helix 22
22
B
159 170Right-handed alpha
Helix 23
23
B
191 204Right-handed alpha
Helix 24
24
B
245 252Right-handed alpha
Helix 25
25
B
261 266Right-handed alpha
Helix 26
26
B
269 290Right-handed alpha
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There are 2 sheets in PDB entry 3DBP. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 68first strand
Strand 2
A
90 93parallel
Strand 3
A
119 126parallel
Strand 4
A
150 154parallel
Strand 5
A
175 179parallel
Strand 6
A
208 212parallel
Strand 7
A
224 227parallel
Strand 8
A
257 260parallel
Strand 9
A
65 68parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 68first strand
Strand 2
B
90 93parallel
Strand 3
B
119 126parallel
Strand 4
B
150 154parallel
Strand 5
B
175 179parallel
Strand 6
B
208 212parallel
Strand 7
B
224 227parallel
Strand 8
B
257 260parallel
Strand 9
B
65 68parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il