Analysis of interatomic Contacts of Structural Units in PDB entry:
3DC0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DC0 entry

There is 1 chain in PDB entry 3DC0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 4ASP 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3DC0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 32Right-handed alpha
Helix 2
2
A
48 52Right-handed 310
Helix 3
3
A
54 62Right-handed 310
Helix 4
4
A
77 90Right-handed alpha
Helix 5
5
A
106 110Right-handed 310
Helix 6
6
A
111 116Right-handed alpha
Helix 7
7
A
132 139Right-handed alpha
Helix 8
8
A
151 169Right-handed alpha
Helix 9
9
A
177 181Right-handed 310
Helix 10
10
A
186 190Right-handed 310
Helix 11
11
A
192 198Right-handed alpha
Helix 12
12
A
216 221Right-handed alpha
Helix 13
13
A
228 242Right-handed alpha
Helix 14
14
A
245 250Right-handed alpha
Helix 15
15
A
257 259Right-handed 310
Helix 16
16
A
267 273Right-handed alpha
Helix 17
17
A
282 294Right-handed alpha
Helix 18
18
A
327 331Right-handed 310
Helix 19
19
A
332 345Right-handed alpha
Helix 20
20
A
354 358Right-handed 310
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There are 5 sheets in PDB entry 3DC0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
36 38parallel
Strand 3
A
93 98parallel
Strand 4
A
172 175parallel
Strand 5
A
204 207parallel
Strand 6
A
225 227parallel
Strand 7
A
261 263parallel
Strand 8
A
300 304parallel
Strand 9
A
11 13parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
A
64 71anti-parallel
Strand 3
A
75 76anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 123first strand
Strand 2
A
146 147anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 353first strand
Strand 2
A
361 366anti-parallel
Strand 3
A
370 375anti-parallel
Strand 4
A
418 422anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 386first strand
Strand 2
A
409 414anti-parallel
Strand 3
A
402 405anti-parallel
Strand 4
A
392 395anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il