Analysis of interatomic Contacts of Structural Units in PDB entry:
3DC5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DC5 entry

There are 2 chains in PDB entry 3DC5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1GLN 194
C
 MET 0GLN 194
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3DC5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 29Right-handed alpha
Helix 2
2
A
29 52Right-handed alpha
Helix 3
3
A
53 60Right-handed alpha
Helix 4
4
A
60 80Right-handed alpha
Helix 5
5
A
89 101Right-handed alpha
Helix 6
6
A
102 116Right-handed alpha
Helix 7
7
A
157 160Right-handed 310
Helix 8
8
A
161 166Right-handed alpha
Helix 9
9
A
168 177Right-handed alpha
Helix 10
10
A
178 180Right-handed 310
Helix 11
11
A
181 194Right-handed alpha
Helix 12
12
C
19 29Right-handed alpha
Helix 13
13
C
29 52Right-handed alpha
Helix 14
14
C
53 60Right-handed alpha
Helix 15
15
C
60 80Right-handed alpha
Helix 16
16
C
89 101Right-handed alpha
Helix 17
17
C
102 116Right-handed alpha
Helix 18
18
C
157 160Right-handed 310
Helix 19
19
C
161 166Right-handed alpha
Helix 20
20
C
168 177Right-handed alpha
Helix 21
21
C
178 180Right-handed 310
Helix 22
22
C
181 193Right-handed alpha
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There are 2 sheets in PDB entry 3DC5. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 140first strand
Strand 2
A
121 128anti-parallel
Strand 3
A
149 155anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 140first strand
Strand 2
C
121 128anti-parallel
Strand 3
C
149 155anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il