Analysis of interatomic Contacts of Structural Units in PDB entry:
3DC7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DC7 entry

There are 3 chains in PDB entry 3DC7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 18HIS 230
B
 HIS 18GLU 226
C
 HIS 18LEU 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3DC7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 51Right-handed alpha
Helix 2
2
A
71 76Right-handed alpha
Helix 3
3
A
77 79Right-handed 310
Helix 4
4
A
91 97Right-handed alpha
Helix 5
5
A
111 127Right-handed alpha
Helix 6
6
A
158 173Right-handed alpha
Helix 7
7
A
180 184Right-handed alpha
Helix 8
8
A
190 198Right-handed alpha
Helix 9
9
A
205 224Right-handed alpha
Helix 10
10
A
225 228Right-handed 310
Helix 11
11
B
41 51Right-handed alpha
Helix 12
12
B
71 76Right-handed alpha
Helix 13
13
B
77 79Right-handed 310
Helix 14
14
B
91 97Right-handed alpha
Helix 15
15
B
111 127Right-handed alpha
Helix 16
16
B
158 173Right-handed alpha
Helix 17
17
B
180 184Right-handed alpha
Helix 18
18
B
190 198Right-handed alpha
Helix 19
19
B
205 224Right-handed alpha
Helix 20
20
C
41 51Right-handed alpha
Helix 21
21
C
71 76Right-handed alpha
Helix 22
22
C
77 79Right-handed 310
Helix 23
23
C
91 97Right-handed alpha
Helix 24
24
C
111 127Right-handed alpha
Helix 25
25
C
158 173Right-handed alpha
Helix 26
26
C
180 184Right-handed alpha
Helix 27
27
C
190 198Right-handed alpha
Helix 28
28
C
205 224Right-handed alpha
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There are 3 sheets in PDB entry 3DC7. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
24 28parallel
Strand 3
A
85 89parallel
Strand 4
A
132 136parallel
Strand 5
A
177 179parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 59first strand
Strand 2
B
24 28parallel
Strand 3
B
85 89parallel
Strand 4
B
132 136parallel
Strand 5
B
177 179parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 59first strand
Strand 2
C
24 28parallel
Strand 3
C
85 89parallel
Strand 4
C
132 136parallel
Strand 5
C
177 179parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il