Analysis of interatomic Contacts of Structural Units in PDB entry:
3DC8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DC8 entry

There are 4 chains in PDB entry 3DC8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2PHE 146
A
 HIS 148HIS 485
B
 SER 2PHE 146
B
 HIS 148SER 477
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 3DC8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
71 82Right-handed alpha
Helix 2
2
A
98 110Right-handed alpha
Helix 3
3
A
127 141Right-handed alpha
Helix 4
4
A
159 174Right-handed alpha
Helix 5
5
A
183 197Right-handed alpha
Helix 6
6
A
201 208Right-handed alpha
Helix 7
7
A
210 229Right-handed alpha
Helix 8
8
A
239 252Right-handed alpha
Helix 9
9
A
261 267Right-handed alpha
Helix 10
10
A
268 274Right-handed 310
Helix 11
11
A
276 283Right-handed alpha
Helix 12
12
A
291 293Right-handed 310
Helix 13
13
A
294 305Right-handed alpha
Helix 14
14
A
318 323Right-handed alpha
Helix 15
15
A
324 326Right-handed 310
Helix 16
16
A
328 332Right-handed 310
Helix 17
17
A
341 351Right-handed alpha
Helix 18
18
A
357 366Right-handed alpha
Helix 19
19
A
366 373Right-handed alpha
Helix 20
20
A
456 470Right-handed alpha
Helix 21
21
B
71 82Right-handed alpha
Helix 22
22
B
98 110Right-handed alpha
Helix 23
23
B
127 141Right-handed alpha
Helix 24
24
B
159 174Right-handed alpha
Helix 25
25
B
183 197Right-handed alpha
Helix 26
26
B
201 208Right-handed alpha
Helix 27
27
B
210 229Right-handed alpha
Helix 28
28
B
239 252Right-handed alpha
Helix 29
29
B
261 267Right-handed alpha
Helix 30
30
B
268 274Right-handed 310
Helix 31
31
B
276 283Right-handed alpha
Helix 32
32
B
291 293Right-handed 310
Helix 33
33
B
294 305Right-handed alpha
Helix 34
34
B
318 323Right-handed alpha
Helix 35
35
B
324 326Right-handed 310
Helix 36
36
B
328 332Right-handed 310
Helix 37
37
B
341 351Right-handed alpha
Helix 38
38
B
357 366Right-handed alpha
Helix 39
39
B
366 373Right-handed alpha
Helix 40
40
B
402 406Right-handed 310
Helix 41
41
B
456 469Right-handed alpha
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There are 8 sheets in PDB entry 3DC8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 32first strand
Strand 2
A
20 24anti-parallel
Strand 3
A
3 6anti-parallel
Strand 4
A
39 42parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
9 11anti-parallel
Strand 3
A
47 50parallel
Strand 4
A
390 400anti-parallel
Strand 5
A
419 429anti-parallel
Strand 6
A
432 436anti-parallel
Strand 7
A
439 440anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 57first strand
Strand 2
A
84 91parallel
Strand 3
A
116 122parallel
Strand 4
A
145 149parallel
Strand 5
A
176 180parallel
Strand 6
A
232 234parallel
Strand 7
A
256 258parallel
Strand 8
A
309 311parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
66 67anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 32first strand
Strand 2
B
20 24anti-parallel
Strand 3
B
3 6anti-parallel
Strand 4
B
39 42parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 18first strand
Strand 2
B
9 11anti-parallel
Strand 3
B
47 50parallel
Strand 4
B
390 400anti-parallel
Strand 5
B
419 429anti-parallel
Strand 6
B
432 436anti-parallel
Strand 7
B
439 440anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 57first strand
Strand 2
B
84 91parallel
Strand 3
B
116 123parallel
Strand 4
B
145 149parallel
Strand 5
B
176 180parallel
Strand 6
B
232 234parallel
Strand 7
B
256 258parallel
Strand 8
B
309 311parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 63first strand
Strand 2
B
66 67anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il