Analysis of interatomic Contacts of Structural Units in PDB entry:
3DCL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DCL entry

There are 5 chains in PDB entry 3DCL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1VAL 281
B
 HIS 0LEU 280
C
 HIS 0TYR 279
D
 GLY -1LEU 280
E
 HIS 0VAL 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 3DCL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 8Right-handed 310
Helix 2
2
A
71 73Right-handed 310
Helix 3
3
A
74 82Right-handed alpha
Helix 4
4
A
117 122Right-handed alpha
Helix 5
5
A
153 158Right-handed alpha
Helix 6
6
A
178 182Right-handed 310
Helix 7
7
A
202 207Right-handed 310
Helix 8
8
A
275 280Right-handed 310
Helix 9
9
B
4 8Right-handed 310
Helix 10
10
B
71 73Right-handed 310
Helix 11
11
B
74 82Right-handed alpha
Helix 12
12
B
117 122Right-handed alpha
Helix 13
13
B
153 158Right-handed alpha
Helix 14
14
B
178 182Right-handed 310
Helix 15
15
B
202 207Right-handed 310
Helix 16
16
B
275 280Right-handed 310
Helix 17
17
C
4 8Right-handed 310
Helix 18
18
C
71 73Right-handed 310
Helix 19
19
C
74 82Right-handed alpha
Helix 20
20
C
117 122Right-handed alpha
Helix 21
21
C
153 158Right-handed alpha
Helix 22
22
C
178 182Right-handed 310
Helix 23
23
C
202 207Right-handed 310
Helix 24
24
C
275 279Right-handed 310
Helix 25
25
D
4 8Right-handed 310
Helix 26
26
D
71 73Right-handed 310
Helix 27
27
D
74 82Right-handed alpha
Helix 28
28
D
117 122Right-handed alpha
Helix 29
29
D
153 158Right-handed alpha
Helix 30
30
D
178 182Right-handed 310
Helix 31
31
D
202 207Right-handed 310
Helix 32
32
D
275 280Right-handed 310
Helix 33
33
E
4 8Right-handed 310
Helix 34
34
E
71 73Right-handed 310
Helix 35
35
E
74 82Right-handed alpha
Helix 36
36
E
117 122Right-handed alpha
Helix 37
37
E
153 158Right-handed alpha
Helix 38
38
E
178 182Right-handed 310
Helix 39
39
E
202 207Right-handed 310
Helix 40
40
E
275 279Right-handed 310
Back to top of page

There are 26 sheets in PDB entry 3DCL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
64 68anti-parallel
Strand 3
A
111 115anti-parallel
Strand 4
A
99 106anti-parallel
Strand 5
A
87 90anti-parallel
Strand 6
A
129 134anti-parallel
Strand 7
A
11 17anti-parallel
Strand 8
A
64 68anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
A
34 35anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
254 262anti-parallel
Strand 3
A
230 241anti-parallel
Strand 4
A
216 223anti-parallel
Strand 5
A
175 177parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
254 262anti-parallel
Strand 3
A
196 197anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 165first strand
Strand 2
A
168 173anti-parallel
Strand 3
A
266 270parallel
Back to list of sheets
Back to top of page

There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 44first strand
Strand 2
B
64 68anti-parallel
Strand 3
B
111 115anti-parallel
Strand 4
B
99 106anti-parallel
Strand 5
B
87 90anti-parallel
Strand 6
B
129 134anti-parallel
Strand 7
B
11 17anti-parallel
Strand 8
B
64 68anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
B
40 41anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 28first strand
Strand 2
B
34 35anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 149first strand
Strand 2
B
254 262anti-parallel
Strand 3
B
230 241anti-parallel
Strand 4
B
216 223anti-parallel
Strand 5
B
175 177parallel
Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 149first strand
Strand 2
B
254 262anti-parallel
Strand 3
B
196 197anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 165first strand
Strand 2
B
168 173anti-parallel
Strand 3
B
266 270parallel
Back to list of sheets
Back to top of page

There are 8 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 44first strand
Strand 2
C
64 68anti-parallel
Strand 3
C
111 115anti-parallel
Strand 4
C
99 106anti-parallel
Strand 5
C
87 90anti-parallel
Strand 6
C
129 134anti-parallel
Strand 7
C
11 17anti-parallel
Strand 8
C
64 68anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 28first strand
Strand 2
C
34 36anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
148 149first strand
Strand 2
C
254 262anti-parallel
Strand 3
C
230 241anti-parallel
Strand 4
C
216 223anti-parallel
Strand 5
C
175 177parallel
Back to list of sheets
Back to top of page

There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
148 149first strand
Strand 2
C
254 262anti-parallel
Strand 3
C
196 197anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
163 165first strand
Strand 2
C
168 173anti-parallel
Strand 3
C
266 270parallel
Back to list of sheets
Back to top of page

There are 8 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
43 44first strand
Strand 2
D
64 68anti-parallel
Strand 3
D
111 115anti-parallel
Strand 4
D
99 106anti-parallel
Strand 5
D
87 90anti-parallel
Strand 6
D
129 134anti-parallel
Strand 7
D
11 17anti-parallel
Strand 8
D
64 68anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
27 28first strand
Strand 2
D
34 35anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
148 149first strand
Strand 2
D
254 262anti-parallel
Strand 3
D
230 241anti-parallel
Strand 4
D
216 223anti-parallel
Strand 5
D
175 177parallel
Back to list of sheets
Back to top of page

There are 3 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
148 149first strand
Strand 2
D
254 262anti-parallel
Strand 3
D
196 197anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
163 164first strand
Strand 2
D
169 173anti-parallel
Strand 3
D
266 270parallel
Back to list of sheets
Back to top of page

There are 8 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
43 44first strand
Strand 2
E
64 68anti-parallel
Strand 3
E
111 115anti-parallel
Strand 4
E
99 106anti-parallel
Strand 5
E
87 90anti-parallel
Strand 6
E
129 134anti-parallel
Strand 7
E
11 17anti-parallel
Strand 8
E
64 68anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
27 28first strand
Strand 2
E
34 35anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
148 149first strand
Strand 2
E
254 262anti-parallel
Strand 3
E
230 241anti-parallel
Strand 4
E
216 223anti-parallel
Strand 5
E
175 177parallel
Back to list of sheets
Back to top of page

There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
148 149first strand
Strand 2
E
254 262anti-parallel
Strand 3
E
196 197anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
163 165first strand
Strand 2
E
168 173anti-parallel
Strand 3
E
266 270parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il