Analysis of interatomic Contacts of Structural Units in PDB entry:
3DD5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3DD5 entry

There are 8 chains in PDB entry 3DD5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 31	GLY 224
B	GLN 31	GLY 224
C	SER 32	GLY 224
D	GLN 31	GLY 224
E	SER 32	GLY 224
F	SER 32	GLY 224
G	SER 32	GLY 224
H	SER 32	GLY 224

There are 77 helices in PDB entry 3DD5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	66	80	Right-handed alpha
Helix 2	2	A	96	102	Right-handed 310
Helix 3	3	A	107	125	Right-handed alpha
Helix 4	4	A	136	148	Right-handed alpha
Helix 5	5	A	150	155	Right-handed alpha
Helix 6	6	A	167	172	Right-handed alpha
Helix 7	7	A	179	181	Right-handed 310
Helix 8	8	A	191	196	Right-handed 310
Helix 9	9	A	207	213	Right-handed alpha
Helix 10	10	A	213	223	Right-handed alpha
Helix 11	11	B	66	80	Right-handed alpha
Helix 12	12	B	97	102	Right-handed 310
Helix 13	13	B	107	125	Right-handed alpha
Helix 14	14	B	136	147	Right-handed alpha
Helix 15	15	B	150	155	Right-handed alpha
Helix 16	16	B	179	181	Right-handed 310
Helix 17	17	B	191	196	Right-handed 310
Helix 18	18	B	207	213	Right-handed alpha
Helix 19	19	B	213	224	Right-handed alpha
Helix 20	20	C	36	41	Right-handed alpha
Helix 21	21	C	66	80	Right-handed alpha
Helix 22	22	C	96	102	Right-handed 310
Helix 23	23	C	107	125	Right-handed alpha
Helix 24	24	C	137	148	Right-handed alpha
Helix 25	25	C	150	156	Right-handed alpha
Helix 26	26	C	179	181	Right-handed 310
Helix 27	27	C	191	196	Right-handed 310
Helix 28	28	C	207	213	Right-handed alpha
Helix 29	29	C	213	224	Right-handed alpha
Helix 30	30	D	66	80	Right-handed alpha
Helix 31	31	D	96	102	Right-handed 310
Helix 32	32	D	107	125	Right-handed alpha
Helix 33	33	D	136	148	Right-handed alpha
Helix 34	34	D	150	155	Right-handed alpha
Helix 35	35	D	191	196	Right-handed 310
Helix 36	36	D	207	213	Right-handed alpha
Helix 37	37	D	213	224	Right-handed alpha
Helix 38	38	E	36	41	Right-handed alpha
Helix 39	39	E	66	80	Right-handed alpha
Helix 40	40	E	97	102	Right-handed 310
Helix 41	41	E	107	125	Right-handed alpha
Helix 42	42	E	136	147	Right-handed alpha
Helix 43	43	E	150	156	Right-handed alpha
Helix 44	44	E	179	181	Right-handed 310
Helix 45	45	E	191	196	Right-handed 310
Helix 46	46	E	207	213	Right-handed alpha
Helix 47	47	E	213	224	Right-handed alpha
Helix 48	48	F	36	41	Right-handed alpha
Helix 49	49	F	66	80	Right-handed alpha
Helix 50	50	F	97	102	Right-handed 310
Helix 51	51	F	107	125	Right-handed alpha
Helix 52	52	F	136	148	Right-handed alpha
Helix 53	53	F	150	156	Right-handed alpha
Helix 54	54	F	179	181	Right-handed 310
Helix 55	55	F	191	196	Right-handed 310
Helix 56	56	F	207	213	Right-handed alpha
Helix 57	57	F	213	224	Right-handed alpha
Helix 58	58	G	42	46	Right-handed 310
Helix 59	59	G	66	80	Right-handed alpha
Helix 60	60	G	96	102	Right-handed 310
Helix 61	61	G	107	125	Right-handed alpha
Helix 62	62	G	137	147	Right-handed alpha
Helix 63	63	G	150	156	Right-handed alpha
Helix 64	64	G	167	172	Right-handed alpha
Helix 65	65	G	191	195	Right-handed 310
Helix 66	66	G	207	213	Right-handed alpha
Helix 67	67	G	213	224	Right-handed alpha
Helix 68	68	H	36	41	Right-handed alpha
Helix 69	69	H	66	80	Right-handed alpha
Helix 70	70	H	96	102	Right-handed 310
Helix 71	71	H	107	125	Right-handed alpha
Helix 72	72	H	136	147	Right-handed alpha
Helix 73	73	H	150	156	Right-handed alpha
Helix 74	74	H	179	181	Right-handed 310
Helix 75	75	H	191	195	Right-handed 310
Helix 76	76	H	207	213	Right-handed alpha
Helix 77	77	H	213	224	Right-handed alpha

There are 8 sheets in PDB entry 3DD5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	88	first strand
Strand 2	A	49	54	parallel
Strand 3	A	129	135	parallel
Strand 4	A	157	163	parallel
Strand 5	A	183	186	parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	88	first strand
Strand 2	B	49	54	parallel
Strand 3	B	129	135	parallel
Strand 4	B	157	163	parallel
Strand 5	B	183	186	parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	88	first strand
Strand 2	C	49	54	parallel
Strand 3	C	129	135	parallel
Strand 4	C	157	163	parallel
Strand 5	C	183	186	parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	88	first strand
Strand 2	D	49	54	parallel
Strand 3	D	129	135	parallel
Strand 4	D	157	163	parallel
Strand 5	D	183	186	parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	88	first strand
Strand 2	E	49	54	parallel
Strand 3	E	129	135	parallel
Strand 4	E	157	163	parallel
Strand 5	E	183	186	parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	88	first strand
Strand 2	F	49	54	parallel
Strand 3	F	129	135	parallel
Strand 4	F	157	163	parallel
Strand 5	F	183	186	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	84	88	first strand
Strand 2	G	49	54	parallel
Strand 3	G	129	135	parallel
Strand 4	G	157	163	parallel
Strand 5	G	183	186	parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	84	88	first strand
Strand 2	H	49	54	parallel
Strand 3	H	129	135	parallel
Strand 4	H	157	163	parallel
Strand 5	H	183	186	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3DD5

Analysis of interatomic Contacts of Structural Units in PDB entry:
3DD5