Analysis of interatomic Contacts of Structural Units in PDB entry:
3DD9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DD9 entry

There are 8 chains in PDB entry 3DD9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 125
B
 MET 1SER 124
C
 MET 1ALA 125
D
 MET 1ASP 126
E
 MET 1SER 124
F
 MET 1GLY 123
G
 MET 1SER 124
H
 MET 1GLU 129
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 3DD9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 18Right-handed alpha
Helix 2
2
A
30 46Right-handed alpha
Helix 3
3
A
50 68Right-handed alpha
Helix 4
4
A
69 86Right-handed alpha
Helix 5
5
A
96 106Right-handed alpha
Helix 6
6
A
110 123Right-handed alpha
Helix 7
7
B
5 20Right-handed alpha
Helix 8
8
B
29 46Right-handed alpha
Helix 9
9
B
50 65Right-handed alpha
Helix 10
10
B
70 87Right-handed alpha
Helix 11
11
B
96 106Right-handed alpha
Helix 12
12
B
110 123Right-handed alpha
Helix 13
13
C
5 17Right-handed alpha
Helix 14
14
C
30 40Right-handed alpha
Helix 15
15
C
50 67Right-handed alpha
Helix 16
16
C
69 87Right-handed alpha
Helix 17
17
C
96 106Right-handed alpha
Helix 18
18
C
110 123Right-handed alpha
Helix 19
19
D
5 20Right-handed alpha
Helix 20
20
D
28 46Right-handed alpha
Helix 21
21
D
50 65Right-handed alpha
Helix 22
22
D
70 87Right-handed alpha
Helix 23
23
D
95 107Right-handed alpha
Helix 24
24
D
110 122Right-handed alpha
Helix 25
25
E
5 17Right-handed alpha
Helix 26
26
E
33 46Right-handed alpha
Helix 27
27
E
50 66Right-handed alpha
Helix 28
28
E
70 87Right-handed alpha
Helix 29
29
E
96 106Right-handed alpha
Helix 30
30
E
110 123Right-handed alpha
Helix 31
31
F
5 14Right-handed alpha
Helix 32
32
F
30 46Right-handed alpha
Helix 33
33
F
50 68Right-handed alpha
Helix 34
34
F
69 87Right-handed alpha
Helix 35
35
F
96 106Right-handed alpha
Helix 36
36
F
110 123Right-handed alpha
Helix 37
37
G
5 18Right-handed alpha
Helix 38
38
G
31 46Right-handed alpha
Helix 39
39
G
50 67Right-handed alpha
Helix 40
40
G
69 87Right-handed alpha
Helix 41
41
G
96 106Right-handed alpha
Helix 42
42
G
110 123Right-handed alpha
Helix 43
43
H
5 19Right-handed alpha
Helix 44
44
H
29 47Right-handed alpha
Helix 45
45
H
50 66Right-handed alpha
Helix 46
46
H
70 87Right-handed alpha
Helix 47
47
H
96 107Right-handed alpha
Helix 48
48
H
110 123Right-handed alpha
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There are no sheets in PDB entry 3DD9
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il