Analysis of interatomic Contacts of Structural Units in PDB entry:
3DDE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DDE entry

There are 2 chains in PDB entry 3DDE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2PHE 233
B
 SER 2ALA 232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 3DDE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 24Right-handed alpha
Helix 2
2
A
24 32Right-handed alpha
Helix 3
3
A
36 52Right-handed alpha
Helix 4
4
A
53 65Right-handed alpha
Helix 5
5
A
69 84Right-handed alpha
Helix 6
6
A
86 97Right-handed alpha
Helix 7
7
A
100 106Right-handed alpha
Helix 8
8
A
110 126Right-handed alpha
Helix 9
9
A
128 131Right-handed 310
Helix 10
10
A
132 141Right-handed alpha
Helix 11
11
A
142 157Right-handed alpha
Helix 12
12
A
160 163Right-handed 310
Helix 13
13
A
164 189Right-handed alpha
Helix 14
14
A
191 223Right-handed alpha
Helix 15
15
B
5 24Right-handed alpha
Helix 16
16
B
24 32Right-handed alpha
Helix 17
17
B
36 52Right-handed alpha
Helix 18
18
B
53 65Right-handed alpha
Helix 19
19
B
69 84Right-handed alpha
Helix 20
20
B
86 97Right-handed alpha
Helix 21
21
B
100 106Right-handed alpha
Helix 22
22
B
110 126Right-handed alpha
Helix 23
23
B
128 130Right-handed 310
Helix 24
24
B
131 140Right-handed alpha
Helix 25
25
B
142 157Right-handed alpha
Helix 26
26
B
160 163Right-handed 310
Helix 27
27
B
164 169Right-handed alpha
Helix 28
28
B
170 189Right-handed alpha
Helix 29
29
B
191 224Right-handed alpha
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There are no sheets in PDB entry 3DDE
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