Analysis of interatomic Contacts of Structural Units in PDB entry:
3DDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DDJ entry

There is 1 chain in PDB entry 3DDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -5LYS 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3DDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 6Right-handed 310
Helix 2
2
A
19 27Right-handed alpha
Helix 3
3
A
28 32Right-handed 310
Helix 4
4
A
48 53Right-handed alpha
Helix 5
5
A
54 56Right-handed 310
Helix 6
6
A
64 73Right-handed alpha
Helix 7
7
A
75 79Right-handed 310
Helix 8
8
A
92 104Right-handed alpha
Helix 9
9
A
123 127Right-handed alpha
Helix 10
10
A
128 133Right-handed 310
Helix 11
11
A
138 143Right-handed alpha
Helix 12
12
A
155 167Right-handed alpha
Helix 13
13
A
186 200Right-handed alpha
Helix 14
14
A
202 207Right-handed alpha
Helix 15
15
A
209 214Right-handed alpha
Helix 16
16
A
226 238Right-handed alpha
Helix 17
17
A
257 275Right-handed alpha
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There are 4 sheets in PDB entry 3DDJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
117 122anti-parallel
Strand 3
A
107 111anti-parallel
Strand 4
A
87 88parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
34 38parallel
Strand 3
A
42 47anti-parallel
Strand 4
A
81 82anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
170 174parallel
Strand 3
A
180 185anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 245first strand
Strand 2
A
251 256anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il