Analysis of interatomic Contacts of Structural Units in PDB entry:
3DDM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DDM entry

There are 4 chains in PDB entry 3DDM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 8CYS 381
B
 ALA 8CYS 381
C
 ALA 8CYS 381
D
 ALA 8CYS 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 66 helices in PDB entry 3DDM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 76Right-handed alpha
Helix 2
2
A
76 82Right-handed alpha
Helix 3
3
A
88 99Right-handed alpha
Helix 4
4
A
100 108Right-handed alpha
Helix 5
5
A
109 132Right-handed alpha
Helix 6
6
A
135 140Right-handed alpha
Helix 7
7
A
158 170Right-handed alpha
Helix 8
8
A
181 197Right-handed alpha
Helix 9
9
A
211 223Right-handed alpha
Helix 10
10
A
224 226Right-handed 310
Helix 11
11
A
239 250Right-handed alpha
Helix 12
12
A
262 273Right-handed alpha
Helix 13
13
A
286 301Right-handed alpha
Helix 14
14
A
312 326Right-handed alpha
Helix 15
15
A
342 347Right-handed alpha
Helix 16
16
A
348 355Right-handed 310
Helix 17
17
A
373 381Right-handed alpha
Helix 18
18
B
65 76Right-handed alpha
Helix 19
19
B
76 82Right-handed alpha
Helix 20
20
B
88 108Right-handed alpha
Helix 21
21
B
109 132Right-handed alpha
Helix 22
22
B
135 140Right-handed alpha
Helix 23
23
B
158 169Right-handed alpha
Helix 24
24
B
181 197Right-handed alpha
Helix 25
25
B
211 222Right-handed alpha
Helix 26
26
B
223 226Right-handed 310
Helix 27
27
B
239 250Right-handed alpha
Helix 28
28
B
262 273Right-handed alpha
Helix 29
29
B
286 301Right-handed alpha
Helix 30
30
B
312 326Right-handed alpha
Helix 31
31
B
342 347Right-handed alpha
Helix 32
32
B
348 355Right-handed 310
Helix 33
33
B
373 381Right-handed alpha
Helix 34
34
C
65 76Right-handed alpha
Helix 35
35
C
76 82Right-handed alpha
Helix 36
36
C
88 99Right-handed alpha
Helix 37
37
C
100 108Right-handed alpha
Helix 38
38
C
109 133Right-handed alpha
Helix 39
39
C
135 140Right-handed alpha
Helix 40
40
C
158 170Right-handed alpha
Helix 41
41
C
181 197Right-handed alpha
Helix 42
42
C
211 223Right-handed alpha
Helix 43
43
C
224 226Right-handed 310
Helix 44
44
C
239 250Right-handed alpha
Helix 45
45
C
262 273Right-handed alpha
Helix 46
46
C
286 301Right-handed alpha
Helix 47
47
C
312 326Right-handed alpha
Helix 48
48
C
342 347Right-handed alpha
Helix 49
49
C
349 355Right-handed 310
Helix 50
50
C
373 380Right-handed alpha
Helix 51
51
D
64 76Right-handed alpha
Helix 52
52
D
76 82Right-handed alpha
Helix 53
53
D
88 99Right-handed alpha
Helix 54
54
D
100 108Right-handed alpha
Helix 55
55
D
109 133Right-handed alpha
Helix 56
56
D
135 140Right-handed alpha
Helix 57
57
D
158 170Right-handed alpha
Helix 58
58
D
181 197Right-handed alpha
Helix 59
59
D
211 223Right-handed alpha
Helix 60
60
D
239 250Right-handed alpha
Helix 61
61
D
262 273Right-handed alpha
Helix 62
62
D
286 301Right-handed alpha
Helix 63
63
D
312 326Right-handed alpha
Helix 64
64
D
342 347Right-handed alpha
Helix 65
65
D
349 355Right-handed 310
Helix 66
66
D
373 379Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 3DDM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 22first strand
Strand 2
A
38 46anti-parallel
Strand 3
A
52 56anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 305first strand
Strand 2
A
275 278parallel
Strand 3
A
254 256parallel
Strand 4
A
229 231parallel
Strand 5
A
202 205parallel
Strand 6
A
174 177parallel
Strand 7
A
146 154parallel
Strand 8
A
334 338parallel
Strand 9
A
308 309parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 305first strand
Strand 2
A
275 278parallel
Strand 3
A
254 256parallel
Strand 4
A
229 231parallel
Strand 5
A
202 205parallel
Strand 6
A
174 177parallel
Strand 7
A
146 154parallel
Strand 8
A
359 361anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 22first strand
Strand 2
B
38 46anti-parallel
Strand 3
B
52 56anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
304 305first strand
Strand 2
B
275 278parallel
Strand 3
B
254 256parallel
Strand 4
B
229 231parallel
Strand 5
B
202 205parallel
Strand 6
B
174 177parallel
Strand 7
B
146 154parallel
Strand 8
B
334 338parallel
Strand 9
B
308 309parallel
Back to list of sheets
Back to top of page

There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
304 305first strand
Strand 2
B
275 278parallel
Strand 3
B
254 256parallel
Strand 4
B
229 231parallel
Strand 5
B
202 205parallel
Strand 6
B
174 177parallel
Strand 7
B
146 154parallel
Strand 8
B
359 361anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 22first strand
Strand 2
C
38 47anti-parallel
Strand 3
C
52 57anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
304 305first strand
Strand 2
C
277 278parallel
Strand 3
C
254 256parallel
Strand 4
C
229 231parallel
Strand 5
C
202 205parallel
Strand 6
C
174 177parallel
Strand 7
C
146 154parallel
Strand 8
C
334 338parallel
Strand 9
C
308 309parallel
Back to list of sheets
Back to top of page

There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
304 305first strand
Strand 2
C
277 278parallel
Strand 3
C
254 256parallel
Strand 4
C
229 231parallel
Strand 5
C
202 205parallel
Strand 6
C
174 177parallel
Strand 7
C
146 154parallel
Strand 8
C
359 361anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 22first strand
Strand 2
D
38 47anti-parallel
Strand 3
D
52 56anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
304 305first strand
Strand 2
D
275 278parallel
Strand 3
D
254 256parallel
Strand 4
D
227 231parallel
Strand 5
D
202 205parallel
Strand 6
D
174 177parallel
Strand 7
D
146 154parallel
Strand 8
D
334 338parallel
Strand 9
D
308 309parallel
Back to list of sheets
Back to top of page

There are 8 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
304 305first strand
Strand 2
D
275 278parallel
Strand 3
D
254 256parallel
Strand 4
D
227 231parallel
Strand 5
D
202 205parallel
Strand 6
D
174 177parallel
Strand 7
D
146 154parallel
Strand 8
D
359 361anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il