Analysis of interatomic Contacts of Structural Units in PDB entry:
3DDS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DDS entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 3DDS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 12ILE 13
A
 ILE 15SER 830
B
 ASN 23SER 830
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 88 helices in PDB entry 3DDS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 38Right-handed alpha
Helix 2
2
A
42 46Right-handed 310
Helix 3
3
A
47 62Right-handed alpha
Helix 4
4
A
63 78Right-handed alpha
Helix 5
5
A
94 102Right-handed alpha
Helix 6
6
A
104 115Right-handed alpha
Helix 7
7
A
118 125Right-handed alpha
Helix 8
8
A
134 150Right-handed alpha
Helix 9
9
A
194 197Right-handed 310
Helix 10
10
A
261 268Right-handed alpha
Helix 11
11
A
268 274Right-handed alpha
Helix 12
12
A
275 277Right-handed 310
Helix 13
13
A
289 314Right-handed alpha
Helix 14
14
A
328 332Right-handed alpha
Helix 15
15
A
344 356Right-handed alpha
Helix 16
16
A
360 371Right-handed alpha
Helix 17
17
A
380 384Right-handed 310
Helix 18
18
A
389 396Right-handed alpha
Helix 19
19
A
396 418Right-handed alpha
Helix 20
20
A
421 429Right-handed alpha
Helix 21
21
A
441 448Right-handed alpha
Helix 22
22
A
456 466Right-handed alpha
Helix 23
23
A
468 475Right-handed alpha
Helix 24
24
A
496 508Right-handed alpha
Helix 25
25
A
509 513Right-handed 310
Helix 26
26
A
514 525Right-handed 310
Helix 27
27
A
527 553Right-handed alpha
Helix 28
28
A
575 593Right-handed alpha
Helix 29
29
A
613 633Right-handed alpha
Helix 30
30
A
636 638Right-handed 310
Helix 31
31
A
649 657Right-handed alpha
Helix 32
32
A
658 660Right-handed 310
Helix 33
33
A
676 684Right-handed alpha
Helix 34
34
A
695 704Right-handed alpha
Helix 35
35
A
705 708Right-handed 310
Helix 36
36
A
714 725Right-handed alpha
Helix 37
37
A
727 735Right-handed alpha
Helix 38
38
A
735 748Right-handed alpha
Helix 39
39
A
758 768Right-handed alpha
Helix 40
40
A
772 792Right-handed alpha
Helix 41
41
A
793 806Right-handed alpha
Helix 42
42
A
807 811Right-handed 310
Helix 43
43
A
812 824Right-handed alpha
Helix 44
44
B
23 38Right-handed alpha
Helix 45
45
B
42 46Right-handed 310
Helix 46
46
B
47 62Right-handed alpha
Helix 47
47
B
63 78Right-handed alpha
Helix 48
48
B
94 102Right-handed alpha
Helix 49
49
B
104 115Right-handed alpha
Helix 50
50
B
118 124Right-handed alpha
Helix 51
51
B
134 150Right-handed alpha
Helix 52
52
B
194 197Right-handed 310
Helix 53
53
B
261 268Right-handed alpha
Helix 54
54
B
268 274Right-handed alpha
Helix 55
55
B
275 277Right-handed 310
Helix 56
56
B
289 314Right-handed alpha
Helix 57
57
B
315 318Right-handed 310
Helix 58
58
B
324 327Right-handed 310
Helix 59
59
B
328 332Right-handed alpha
Helix 60
60
B
344 356Right-handed alpha
Helix 61
61
B
360 371Right-handed alpha
Helix 62
62
B
380 384Right-handed 310
Helix 63
63
B
389 396Right-handed alpha
Helix 64
64
B
396 418Right-handed alpha
Helix 65
65
B
421 429Right-handed alpha
Helix 66
66
B
441 448Right-handed alpha
Helix 67
67
B
456 466Right-handed alpha
Helix 68
68
B
468 475Right-handed alpha
Helix 69
69
B
496 508Right-handed alpha
Helix 70
70
B
509 513Right-handed 310
Helix 71
71
B
514 525Right-handed 310
Helix 72
72
B
527 554Right-handed alpha
Helix 73
73
B
575 593Right-handed alpha
Helix 74
74
B
613 633Right-handed alpha
Helix 75
75
B
636 638Right-handed 310
Helix 76
76
B
649 657Right-handed alpha
Helix 77
77
B
658 660Right-handed 310
Helix 78
78
B
676 684Right-handed alpha
Helix 79
79
B
695 704Right-handed alpha
Helix 80
80
B
705 708Right-handed 310
Helix 81
81
B
714 725Right-handed alpha
Helix 82
82
B
728 735Right-handed alpha
Helix 83
83
B
735 748Right-handed alpha
Helix 84
84
B
758 768Right-handed alpha
Helix 85
85
B
772 792Right-handed alpha
Helix 86
86
B
793 807Right-handed alpha
Helix 87
87
B
808 811Right-handed 310
Helix 88
88
B
812 824Right-handed alpha
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There are 15 sheets in PDB entry 3DDS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
219 231anti-parallel
Strand 3
A
198 202anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
219 231anti-parallel
Strand 3
A
238 247anti-parallel
Strand 4
A
154 159parallel
Strand 5
A
81 85parallel
Strand 6
A
333 338parallel
Strand 7
A
372 375parallel
Strand 8
A
451 454parallel
Strand 9
A
479 481parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 92first strand
Strand 2
A
129 131anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 171first strand
Strand 2
A
174 178anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 209first strand
Strand 2
A
212 216anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 320first strand
Strand 2
A
323 324anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 388first strand
Strand 2
A
438 440anti-parallel
Strand 3
A
431 432anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
640 645first strand
Strand 2
A
601 606parallel
Strand 3
A
562 567parallel
Strand 4
A
662 665parallel
Strand 5
A
687 690parallel
Strand 6
A
709 710parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 192first strand
Strand 2
B
219 231anti-parallel
Strand 3
B
198 202anti-parallel
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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 192first strand
Strand 2
B
219 231anti-parallel
Strand 3
B
238 247anti-parallel
Strand 4
B
153 159parallel
Strand 5
B
81 85parallel
Strand 6
B
333 338parallel
Strand 7
B
372 375parallel
Strand 8
B
451 454parallel
Strand 9
B
479 481parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 90first strand
Strand 2
B
130 131anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 171first strand
Strand 2
B
174 178anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 209first strand
Strand 2
B
212 216anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
386 388first strand
Strand 2
B
438 440anti-parallel
Strand 3
B
431 432anti-parallel
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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
640 645first strand
Strand 2
B
601 606parallel
Strand 3
B
562 567parallel
Strand 4
B
662 665parallel
Strand 5
B
687 690parallel
Strand 6
B
709 710parallel
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