Analysis of interatomic Contacts of Structural Units in PDB entry:
3DED


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DED entry

There are 6 chains in PDB entry 3DED (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 341HIS 427
B
 ASP 341HIS 426
C
 ASP 337HIS 427
D
 ASP 341HIS 426
E
 ASP 341HIS 427
F
 ASP 341HIS 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 3DED. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
358 366Right-handed alpha
Helix 2
2
A
374 378Right-handed 310
Helix 3
3
A
382 392Right-handed alpha
Helix 4
4
B
358 367Right-handed alpha
Helix 5
5
B
374 378Right-handed 310
Helix 6
6
B
382 392Right-handed alpha
Helix 7
7
C
358 366Right-handed alpha
Helix 8
8
C
382 392Right-handed alpha
Helix 9
9
D
358 367Right-handed alpha
Helix 10
10
D
374 378Right-handed 310
Helix 11
11
D
382 392Right-handed alpha
Helix 12
12
E
358 366Right-handed alpha
Helix 13
13
E
374 378Right-handed 310
Helix 14
14
E
382 392Right-handed alpha
Helix 15
15
F
358 367Right-handed alpha
Helix 16
16
F
382 392Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3DED. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 345first strand
Strand 2
A
351 354anti-parallel
Strand 3
A
417 425anti-parallel
Strand 4
A
406 414anti-parallel
Strand 5
A
400 403anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
343 345first strand
Strand 2
B
351 354anti-parallel
Strand 3
B
417 425anti-parallel
Strand 4
B
406 414anti-parallel
Strand 5
B
400 403anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
343 345first strand
Strand 2
C
351 354anti-parallel
Strand 3
C
417 425anti-parallel
Strand 4
C
406 414anti-parallel
Strand 5
C
400 403anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
343 345first strand
Strand 2
D
351 354anti-parallel
Strand 3
D
417 425anti-parallel
Strand 4
D
406 414anti-parallel
Strand 5
D
400 403anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
343 345first strand
Strand 2
E
351 354anti-parallel
Strand 3
E
417 425anti-parallel
Strand 4
E
406 414anti-parallel
Strand 5
E
400 403anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
343 345first strand
Strand 2
F
351 354anti-parallel
Strand 3
F
417 425anti-parallel
Strand 4
F
406 414anti-parallel
Strand 5
F
400 403anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il