Analysis of interatomic Contacts of Structural Units in PDB entry:
3DEE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DEE entry

There is 1 chain in PDB entry 3DEE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 31SER 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3DEE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 50Right-handed alpha
Helix 2
2
A
52 57Right-handed 310
Helix 3
3
A
58 72Right-handed alpha
Helix 4
4
A
73 77Right-handed 310
Helix 5
5
A
79 81Right-handed 310
Helix 6
6
A
82 94Right-handed alpha
Helix 7
7
A
97 116Right-handed alpha
Helix 8
8
A
174 187Right-handed alpha
Helix 9
9
A
190 199Right-handed alpha
Helix 10
10
A
200 202Right-handed 310
Helix 11
11
A
206 222Right-handed alpha
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There are 2 sheets in PDB entry 3DEE. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
225 227anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 145first strand
Strand 2
A
153 162anti-parallel
Strand 3
A
168 172anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il