Analysis of interatomic Contacts of Structural Units in PDB entry:
3DEV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DEV entry

There are 2 chains in PDB entry 3DEV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1HIS 316
B
 MSE 1HIS 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 3DEV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 14Right-handed alpha
Helix 2
2
A
27 45Right-handed alpha
Helix 3
3
A
57 61Right-handed 310
Helix 4
4
A
86 90Right-handed 310
Helix 5
5
A
92 97Right-handed 310
Helix 6
6
A
125 136Right-handed alpha
Helix 7
7
A
144 159Right-handed alpha
Helix 8
8
A
168 181Right-handed alpha
Helix 9
9
A
184 194Right-handed alpha
Helix 10
10
A
196 198Right-handed 310
Helix 11
11
A
199 209Right-handed alpha
Helix 12
12
A
224 231Right-handed alpha
Helix 13
13
A
234 239Right-handed alpha
Helix 14
14
A
240 245Right-handed 310
Helix 15
15
A
275 282Right-handed alpha
Helix 16
16
A
297 312Right-handed alpha
Helix 17
17
B
3 14Right-handed alpha
Helix 18
18
B
27 45Right-handed alpha
Helix 19
19
B
57 61Right-handed 310
Helix 20
20
B
86 90Right-handed 310
Helix 21
21
B
92 97Right-handed 310
Helix 22
22
B
125 136Right-handed alpha
Helix 23
23
B
144 159Right-handed alpha
Helix 24
24
B
168 180Right-handed alpha
Helix 25
25
B
184 194Right-handed alpha
Helix 26
26
B
196 198Right-handed 310
Helix 27
27
B
199 209Right-handed alpha
Helix 28
28
B
224 231Right-handed alpha
Helix 29
29
B
234 239Right-handed alpha
Helix 30
30
B
240 245Right-handed 310
Helix 31
31
B
275 282Right-handed alpha
Helix 32
32
B
297 312Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3DEV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
17 21parallel
Strand 3
A
78 82parallel
Strand 4
A
101 105parallel
Strand 5
A
116 119parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 223first strand
Strand 2
A
253 259parallel
Strand 3
A
264 270anti-parallel
Strand 4
A
290 295anti-parallel
Strand 5
A
285 287anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 52first strand
Strand 2
B
17 21parallel
Strand 3
B
78 82parallel
Strand 4
B
101 105parallel
Strand 5
B
116 119parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 223first strand
Strand 2
B
253 259parallel
Strand 3
B
264 270anti-parallel
Strand 4
B
290 295anti-parallel
Strand 5
B
285 287anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il