Analysis of interatomic Contacts of Structural Units in PDB entry:
3DF7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DF7 entry

There is 1 chain in PDB entry 3DF7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1ASP 305
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3DF7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 13Right-handed alpha
Helix 2
2
A
17 36Right-handed alpha
Helix 3
3
A
46 50Right-handed 310
Helix 4
4
A
59 61Right-handed 310
Helix 5
5
A
62 68Right-handed alpha
Helix 6
6
A
79 81Right-handed 310
Helix 7
7
A
82 93Right-handed alpha
Helix 8
8
A
101 109Right-handed alpha
Helix 9
9
A
110 119Right-handed alpha
Helix 10
10
A
205 221Right-handed alpha
Helix 11
11
A
250 254Right-handed 310
Helix 12
12
A
255 261Right-handed alpha
Helix 13
13
A
263 269Right-handed alpha
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There are 3 sheets in PDB entry 3DF7. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 42first strand
Strand 2
A
3 8parallel
Strand 3
A
72 76parallel
Strand 4
A
96 97parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
159 163anti-parallel
Strand 3
A
136 140anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 246first strand
Strand 2
A
228 236anti-parallel
Strand 3
A
168 176anti-parallel
Strand 4
A
180 191anti-parallel
Strand 5
A
194 200anti-parallel
Strand 6
A
279 285anti-parallel
Strand 7
A
297 303anti-parallel
Strand 8
A
292 294anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il