Analysis of interatomic Contacts of Structural Units in PDB entry:
3DFZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DFZ entry

There are 2 chains in PDB entry 3DFZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 201
B
 MET 1TYR 201
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3DFZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 30Right-handed alpha
Helix 2
2
A
31 33Right-handed 310
Helix 3
3
A
44 53Right-handed alpha
Helix 4
4
A
64 68Right-handed 310
Helix 5
5
A
81 91Right-handed alpha
Helix 6
6
A
129 144Right-handed alpha
Helix 7
7
A
146 165Right-handed alpha
Helix 8
8
A
168 179Right-handed alpha
Helix 9
9
A
181 187Right-handed alpha
Helix 10
10
A
187 200Right-handed alpha
Helix 11
11
B
19 30Right-handed alpha
Helix 12
12
B
44 53Right-handed alpha
Helix 13
13
B
64 69Right-handed 310
Helix 14
14
B
80 88Right-handed alpha
Helix 15
15
B
129 144Right-handed alpha
Helix 16
16
B
146 164Right-handed alpha
Helix 17
17
B
168 179Right-handed alpha
Helix 18
18
B
181 187Right-handed alpha
Helix 19
19
B
187 198Right-handed alpha
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There are 4 sheets in PDB entry 3DFZ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 109first strand
Strand 2
B
2 6anti-parallel
Strand 3
A
3 6anti-parallel
Strand 4
B
108 109anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
36 39parallel
Strand 3
A
13 16parallel
Strand 4
A
73 76parallel
Strand 5
A
96 98parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 116first strand
Strand 2
A
119 124anti-parallel
Strand 3
B
119 124anti-parallel
Strand 4
B
112 116anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 59first strand
Strand 2
B
35 39parallel
Strand 3
B
12 16parallel
Strand 4
B
73 76parallel
Strand 5
B
96 99parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il