Analysis of interatomic Contacts of Structural Units in PDB entry:
3DG6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DG6 entry

There is 1 chain in PDB entry 3DG6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3DG6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
58 69Right-handed alpha
Helix 2
2
A
69 75Right-handed alpha
Helix 3
3
A
81 90Right-handed alpha
Helix 4
4
A
95 115Right-handed alpha
Helix 5
5
A
117 123Right-handed alpha
Helix 6
6
A
139 155Right-handed alpha
Helix 7
7
A
167 183Right-handed alpha
Helix 8
8
A
184 186Right-handed 310
Helix 9
9
A
197 208Right-handed alpha
Helix 10
10
A
224 235Right-handed alpha
Helix 11
11
A
247 257Right-handed alpha
Helix 12
12
A
266 271Right-handed alpha
Helix 13
13
A
272 286Right-handed alpha
Helix 14
14
A
297 309Right-handed alpha
Helix 15
15
A
311 316Right-handed alpha
Helix 16
16
A
322 327Right-handed 310
Helix 17
17
A
356 364Right-handed alpha
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There are 3 sheets in PDB entry 3DG6. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 21first strand
Strand 2
A
24 38anti-parallel
Strand 3
A
43 48anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 291first strand
Strand 2
A
262 265parallel
Strand 3
A
239 241parallel
Strand 4
A
216 217parallel
Strand 5
A
187 191parallel
Strand 6
A
158 162parallel
Strand 7
A
128 135parallel
Strand 8
A
319 320parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 291first strand
Strand 2
A
262 265parallel
Strand 3
A
239 241parallel
Strand 4
A
216 217parallel
Strand 5
A
187 191parallel
Strand 6
A
158 162parallel
Strand 7
A
128 135parallel
Strand 8
A
342 344anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il