Analysis of interatomic Contacts of Structural Units in PDB entry:
3DG7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DG7 entry

There are 4 chains in PDB entry 3DG7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 366
B
 MET 1ASP 366
C
 MET 1ASP 366
D
 MET 1ASP 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 3DG7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
58 69Right-handed alpha
Helix 2
2
A
69 75Right-handed alpha
Helix 3
3
A
81 90Right-handed alpha
Helix 4
4
A
95 115Right-handed alpha
Helix 5
5
A
117 123Right-handed alpha
Helix 6
6
A
139 155Right-handed alpha
Helix 7
7
A
167 183Right-handed alpha
Helix 8
8
A
184 186Right-handed 310
Helix 9
9
A
197 208Right-handed alpha
Helix 10
10
A
224 235Right-handed alpha
Helix 11
11
A
247 257Right-handed alpha
Helix 12
12
A
266 271Right-handed alpha
Helix 13
13
A
272 286Right-handed alpha
Helix 14
14
A
297 309Right-handed alpha
Helix 15
15
A
311 316Right-handed alpha
Helix 16
16
A
322 327Right-handed 310
Helix 17
17
A
356 364Right-handed alpha
Helix 18
18
B
58 69Right-handed alpha
Helix 19
19
B
69 75Right-handed alpha
Helix 20
20
B
81 90Right-handed alpha
Helix 21
21
B
95 115Right-handed alpha
Helix 22
22
B
117 123Right-handed alpha
Helix 23
23
B
139 155Right-handed alpha
Helix 24
24
B
168 183Right-handed alpha
Helix 25
25
B
184 186Right-handed 310
Helix 26
26
B
197 208Right-handed alpha
Helix 27
27
B
224 235Right-handed alpha
Helix 28
28
B
247 257Right-handed alpha
Helix 29
29
B
266 271Right-handed alpha
Helix 30
30
B
272 286Right-handed alpha
Helix 31
31
B
297 309Right-handed alpha
Helix 32
32
B
311 316Right-handed alpha
Helix 33
33
B
322 327Right-handed 310
Helix 34
34
B
356 364Right-handed alpha
Helix 35
35
C
58 69Right-handed alpha
Helix 36
36
C
69 75Right-handed alpha
Helix 37
37
C
81 90Right-handed alpha
Helix 38
38
C
95 115Right-handed alpha
Helix 39
39
C
117 123Right-handed alpha
Helix 40
40
C
139 155Right-handed alpha
Helix 41
41
C
167 183Right-handed alpha
Helix 42
42
C
184 186Right-handed 310
Helix 43
43
C
197 208Right-handed alpha
Helix 44
44
C
224 235Right-handed alpha
Helix 45
45
C
247 257Right-handed alpha
Helix 46
46
C
266 271Right-handed alpha
Helix 47
47
C
272 286Right-handed alpha
Helix 48
48
C
297 309Right-handed alpha
Helix 49
49
C
311 316Right-handed alpha
Helix 50
50
C
322 327Right-handed 310
Helix 51
51
C
356 364Right-handed alpha
Helix 52
52
D
58 69Right-handed alpha
Helix 53
53
D
69 75Right-handed alpha
Helix 54
54
D
81 90Right-handed alpha
Helix 55
55
D
95 115Right-handed alpha
Helix 56
56
D
117 123Right-handed alpha
Helix 57
57
D
139 155Right-handed alpha
Helix 58
58
D
167 183Right-handed alpha
Helix 59
59
D
184 186Right-handed 310
Helix 60
60
D
197 208Right-handed alpha
Helix 61
61
D
224 235Right-handed alpha
Helix 62
62
D
247 257Right-handed alpha
Helix 63
63
D
266 271Right-handed alpha
Helix 64
64
D
272 286Right-handed alpha
Helix 65
65
D
297 309Right-handed alpha
Helix 66
66
D
311 316Right-handed alpha
Helix 67
67
D
322 327Right-handed 310
Helix 68
68
D
356 364Right-handed alpha
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There are 15 sheets in PDB entry 3DG7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 10first strand
Strand 2
A
32 38anti-parallel
Strand 3
A
43 48anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 21first strand
Strand 2
A
24 29anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 291first strand
Strand 2
A
262 265parallel
Strand 3
A
239 241parallel
Strand 4
A
216 217parallel
Strand 5
A
187 191parallel
Strand 6
A
158 162parallel
Strand 7
A
128 135parallel
Strand 8
A
319 320parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 291first strand
Strand 2
A
262 265parallel
Strand 3
A
239 241parallel
Strand 4
A
216 217parallel
Strand 5
A
187 191parallel
Strand 6
A
158 162parallel
Strand 7
A
128 135parallel
Strand 8
A
342 344anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 21first strand
Strand 2
B
24 38anti-parallel
Strand 3
B
43 48anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 291first strand
Strand 2
B
262 265parallel
Strand 3
B
239 241parallel
Strand 4
B
216 217parallel
Strand 5
B
187 191parallel
Strand 6
B
158 162parallel
Strand 7
B
128 135parallel
Strand 8
B
319 320parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 291first strand
Strand 2
B
262 265parallel
Strand 3
B
239 241parallel
Strand 4
B
216 217parallel
Strand 5
B
187 191parallel
Strand 6
B
158 162parallel
Strand 7
B
128 135parallel
Strand 8
B
342 344anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 10first strand
Strand 2
C
32 38anti-parallel
Strand 3
C
43 48anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 20first strand
Strand 2
C
25 29anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
288 291first strand
Strand 2
C
262 265parallel
Strand 3
C
239 241parallel
Strand 4
C
216 217parallel
Strand 5
C
187 191parallel
Strand 6
C
158 162parallel
Strand 7
C
128 135parallel
Strand 8
C
319 320parallel
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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
288 291first strand
Strand 2
C
262 265parallel
Strand 3
C
239 241parallel
Strand 4
C
216 217parallel
Strand 5
C
187 191parallel
Strand 6
C
158 162parallel
Strand 7
C
128 135parallel
Strand 8
C
342 344anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 10first strand
Strand 2
D
32 38anti-parallel
Strand 3
D
43 48anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
13 21first strand
Strand 2
D
24 29anti-parallel
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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
288 291first strand
Strand 2
D
262 265parallel
Strand 3
D
239 241parallel
Strand 4
D
216 217parallel
Strand 5
D
187 191parallel
Strand 6
D
158 162parallel
Strand 7
D
128 135parallel
Strand 8
D
319 320parallel
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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
288 291first strand
Strand 2
D
262 265parallel
Strand 3
D
239 241parallel
Strand 4
D
216 217parallel
Strand 5
D
187 191parallel
Strand 6
D
158 162parallel
Strand 7
D
128 135parallel
Strand 8
D
342 344anti-parallel
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