Analysis of interatomic Contacts of Structural Units in PDB entry:
3DGB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DGB entry

There is 1 chain in PDB entry 3DGB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 4ARG 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 3DGB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 76Right-handed alpha
Helix 2
2
A
76 82Right-handed alpha
Helix 3
3
A
88 100Right-handed alpha
Helix 4
4
A
103 123Right-handed alpha
Helix 5
5
A
125 130Right-handed alpha
Helix 6
6
A
148 162Right-handed alpha
Helix 7
7
A
176 192Right-handed alpha
Helix 8
8
A
193 195Right-handed 310
Helix 9
9
A
206 219Right-handed alpha
Helix 10
10
A
233 244Right-handed alpha
Helix 11
11
A
256 267Right-handed alpha
Helix 12
12
A
275 280Right-handed alpha
Helix 13
13
A
281 295Right-handed alpha
Helix 14
14
A
307 319Right-handed alpha
Helix 15
15
A
331 336Right-handed alpha
Helix 16
16
A
365 373Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 3DGB. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 25first strand
Strand 2
A
30 43anti-parallel
Strand 3
A
48 54anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 139first strand
Strand 2
A
351 353anti-parallel
Strand 3
A
346 348anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 144first strand
Strand 2
A
167 171parallel
Strand 3
A
196 200parallel
Strand 4
A
225 226parallel
Strand 5
A
248 250parallel
Strand 6
A
271 274parallel
Strand 7
A
298 301parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il