Analysis of interatomic Contacts of Structural Units in PDB entry:
3DGD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DGD entry

There are 4 chains in PDB entry 3DGD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 10PRO 125
B
 CYS 10ASN 124
C
 CYS 10PRO 125
D
 CYS 10ASN 124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 3DGD

There are 8 sheets in PDB entry 3DGD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
12 18anti-parallel
Strand 3
A
104 112parallel
Strand 4
A
115 123anti-parallel
Strand 5
B
115 123anti-parallel
Strand 6
B
104 112anti-parallel
Strand 7
B
12 18parallel
Strand 8
B
23 24anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
12 18anti-parallel
Strand 3
A
104 112parallel
Strand 4
A
115 123anti-parallel
Strand 5
B
115 123anti-parallel
Strand 6
B
104 112anti-parallel
Strand 7
B
12 18parallel
Strand 8
B
54 55anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 48first strand
Strand 2
A
29 35anti-parallel
Strand 3
A
67 74anti-parallel
Strand 4
A
90 97anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 48first strand
Strand 2
B
29 35anti-parallel
Strand 3
B
67 74anti-parallel
Strand 4
B
90 97anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
23 24first strand
Strand 2
C
12 18anti-parallel
Strand 3
C
104 112parallel
Strand 4
C
115 123anti-parallel
Strand 5
D
115 123anti-parallel
Strand 6
D
104 112anti-parallel
Strand 7
D
12 18parallel
Strand 8
D
23 24anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 55first strand
Strand 2
C
12 18anti-parallel
Strand 3
C
104 112parallel
Strand 4
C
115 123anti-parallel
Strand 5
D
115 123anti-parallel
Strand 6
D
104 112anti-parallel
Strand 7
D
12 18parallel
Strand 8
D
54 55anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
41 48first strand
Strand 2
C
29 35anti-parallel
Strand 3
C
67 74anti-parallel
Strand 4
C
90 97anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
41 48first strand
Strand 2
D
29 35anti-parallel
Strand 3
D
67 74anti-parallel
Strand 4
D
90 97anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il