Analysis of interatomic Contacts of Structural Units in PDB entry:
3DGE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DGE entry

There are 4 chains in PDB entry 3DGE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 245ALA 481
C
 MET 1GLU 122
B
 LYS 245ALA 481
D
 MET 1GLU 122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3DGE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
246 279Right-handed alpha
Helix 2
2
A
284 316Right-handed alpha
Helix 3
3
A
329 339Right-handed alpha
Helix 4
4
A
340 347Right-handed alpha
Helix 5
5
A
366 384Right-handed alpha
Helix 6
6
A
422 426Right-handed 310
Helix 7
7
A
444 456Right-handed alpha
Helix 8
8
C
11 24Right-handed alpha
Helix 9
9
C
34 41Right-handed alpha
Helix 10
10
C
60 70Right-handed alpha
Helix 11
11
C
71 76Right-handed alpha
Helix 12
12
C
87 96Right-handed alpha
Helix 13
13
C
108 121Right-handed alpha
Helix 14
14
B
246 279Right-handed alpha
Helix 15
15
B
284 316Right-handed alpha
Helix 16
16
B
329 346Right-handed alpha
Helix 17
17
B
366 384Right-handed alpha
Helix 18
18
B
422 426Right-handed 310
Helix 19
19
B
444 456Right-handed alpha
Helix 20
20
D
11 24Right-handed alpha
Helix 21
21
D
34 40Right-handed alpha
Helix 22
22
D
60 69Right-handed alpha
Helix 23
23
D
71 76Right-handed alpha
Helix 24
24
D
89 97Right-handed alpha
Helix 25
25
D
108 121Right-handed alpha
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There are 6 sheets in PDB entry 3DGE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 328first strand
Strand 2
A
362 365anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 355first strand
Strand 2
A
393 398parallel
Strand 3
A
404 411anti-parallel
Strand 4
A
469 477anti-parallel
Strand 5
A
459 465anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 32first strand
Strand 2
C
4 8parallel
Strand 3
C
50 52parallel
Strand 4
C
79 83parallel
Strand 5
C
101 104parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 328first strand
Strand 2
B
362 365anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 355first strand
Strand 2
B
393 401parallel
Strand 3
B
404 411anti-parallel
Strand 4
B
469 476anti-parallel
Strand 5
B
459 465anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
28 32first strand
Strand 2
D
4 8parallel
Strand 3
D
50 52parallel
Strand 4
D
79 83parallel
Strand 5
D
101 104parallel
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