Analysis of interatomic Contacts of Structural Units in PDB entry:
3DGH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DGH entry

There are 2 chains in PDB entry 3DGH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7ASP 483
B
 SER 7ARG 479
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 3DGH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 31Right-handed alpha
Helix 2
2
A
55 61Right-handed alpha
Helix 3
3
A
61 84Right-handed alpha
Helix 4
4
A
95 121Right-handed alpha
Helix 5
5
A
169 174Right-handed alpha
Helix 6
6
A
176 181Right-handed alpha
Helix 7
7
A
196 209Right-handed alpha
Helix 8
8
A
226 240Right-handed alpha
Helix 9
9
A
291 299Right-handed 310
Helix 10
10
A
334 351Right-handed alpha
Helix 11
11
A
378 387Right-handed alpha
Helix 12
12
A
400 404Right-handed 310
Helix 13
13
A
436 450Right-handed alpha
Helix 14
14
A
453 459Right-handed alpha
Helix 15
15
A
467 474Right-handed 310
Helix 16
16
B
18 31Right-handed alpha
Helix 17
17
B
55 61Right-handed alpha
Helix 18
18
B
61 84Right-handed alpha
Helix 19
19
B
95 121Right-handed alpha
Helix 20
20
B
169 174Right-handed alpha
Helix 21
21
B
176 181Right-handed alpha
Helix 22
22
B
196 209Right-handed alpha
Helix 23
23
B
226 240Right-handed alpha
Helix 24
24
B
291 299Right-handed 310
Helix 25
25
B
325 328Right-handed 310
Helix 26
26
B
334 351Right-handed alpha
Helix 27
27
B
378 387Right-handed alpha
Helix 28
28
B
400 404Right-handed 310
Helix 29
29
B
436 450Right-handed alpha
Helix 30
30
B
453 460Right-handed alpha
Helix 31
31
B
467 474Right-handed 310
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There are 12 sheets in PDB entry 3DGH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 126first strand
Strand 2
A
35 38parallel
Strand 3
A
10 15parallel
Strand 4
A
147 156parallel
Strand 5
A
137 141anti-parallel
Strand 6
A
129 134anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 126first strand
Strand 2
A
35 38parallel
Strand 3
A
10 15parallel
Strand 4
A
147 156parallel
Strand 5
A
321 323parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
287 289anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 246first strand
Strand 2
A
212 217parallel
Strand 3
A
189 193parallel
Strand 4
A
280 283parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 255first strand
Strand 2
A
261 267anti-parallel
Strand 3
A
273 278anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 366first strand
Strand 2
A
371 376anti-parallel
Strand 3
A
427 434anti-parallel
Strand 4
A
414 420anti-parallel
Strand 5
A
391 397anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 126first strand
Strand 2
B
35 38parallel
Strand 3
B
10 15parallel
Strand 4
B
149 156parallel
Strand 5
B
137 141anti-parallel
Strand 6
B
129 134anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 126first strand
Strand 2
B
35 38parallel
Strand 3
B
10 15parallel
Strand 4
B
149 156parallel
Strand 5
B
321 323parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 162first strand
Strand 2
B
287 289anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 246first strand
Strand 2
B
212 217parallel
Strand 3
B
189 193parallel
Strand 4
B
280 283parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 255first strand
Strand 2
B
261 267anti-parallel
Strand 3
B
273 278anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
364 366first strand
Strand 2
B
371 376anti-parallel
Strand 3
B
427 434anti-parallel
Strand 4
B
414 420anti-parallel
Strand 5
B
391 397anti-parallel
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