Analysis of interatomic Contacts of Structural Units in PDB entry:
3DGV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DGV entry

There are 3 chains in PDB entry 3DGV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 1VAL 308
B
 PHE 1VAL 308
C
 GLN 2VAL 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 3DGV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 27Right-handed alpha
Helix 2
2
A
36 40Right-handed 310
Helix 3
3
A
54 65Right-handed alpha
Helix 4
4
A
75 84Right-handed alpha
Helix 5
5
A
7 11Right-handed 310
Helix 6
6
A
14 29Right-handed alpha
Helix 7
7
A
73 90Right-handed alpha
Helix 8
8
A
93 102Right-handed alpha
Helix 9
9
A
112 122Right-handed alpha
Helix 10
10
A
142 146Right-handed 310
Helix 11
11
A
173 186Right-handed alpha
Helix 12
12
A
215 234Right-handed alpha
Helix 13
13
A
244 246Right-handed 310
Helix 14
14
A
253 260Right-handed alpha
Helix 15
15
A
282 284Right-handed 310
Helix 16
16
A
285 306Right-handed alpha
Helix 17
17
B
13 25Right-handed alpha
Helix 18
18
B
36 40Right-handed 310
Helix 19
19
B
54 65Right-handed alpha
Helix 20
20
B
75 84Right-handed alpha
Helix 21
21
B
6 11Right-handed 310
Helix 22
22
B
14 29Right-handed alpha
Helix 23
23
B
73 90Right-handed alpha
Helix 24
24
B
93 102Right-handed alpha
Helix 25
25
B
112 122Right-handed alpha
Helix 26
26
B
142 146Right-handed 310
Helix 27
27
B
173 186Right-handed alpha
Helix 28
28
B
215 234Right-handed alpha
Helix 29
29
B
244 246Right-handed 310
Helix 30
30
B
253 260Right-handed alpha
Helix 31
31
B
282 284Right-handed 310
Helix 32
32
B
285 307Right-handed alpha
Helix 33
33
C
14 27Right-handed alpha
Helix 34
34
C
54 64Right-handed alpha
Helix 35
35
C
75 84Right-handed alpha
Helix 36
36
C
14 29Right-handed alpha
Helix 37
37
C
73 89Right-handed alpha
Helix 38
38
C
112 121Right-handed alpha
Helix 39
39
C
142 146Right-handed 310
Helix 40
40
C
173 187Right-handed alpha
Helix 41
41
C
215 231Right-handed alpha
Helix 42
42
C
253 261Right-handed alpha
Helix 43
43
C
277 281Right-handed 310
Helix 44
44
C
283 285Right-handed 310
Helix 45
45
C
286 307Right-handed alpha
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There are 6 sheets in PDB entry 3DGV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
46 51anti-parallel
Strand 3
A
4 9anti-parallel
Strand 4
A
69 73anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 40first strand
Strand 2
A
46 52anti-parallel
Strand 3
A
103 108anti-parallel
Strand 4
A
60 66parallel
Strand 5
A
189 196parallel
Strand 6
A
265 270parallel
Strand 7
A
201 204anti-parallel
Strand 8
A
239 242parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 33first strand
Strand 2
B
46 51anti-parallel
Strand 3
B
4 9anti-parallel
Strand 4
B
69 73anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 40first strand
Strand 2
B
46 52anti-parallel
Strand 3
B
103 108anti-parallel
Strand 4
B
60 65parallel
Strand 5
B
189 196parallel
Strand 6
B
265 270parallel
Strand 7
B
201 204anti-parallel
Strand 8
B
239 242parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 33first strand
Strand 2
C
47 50anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 40first strand
Strand 2
C
46 52anti-parallel
Strand 3
C
104 108anti-parallel
Strand 4
C
61 65parallel
Strand 5
C
189 195parallel
Strand 6
C
266 269parallel
Strand 7
C
202 204anti-parallel
Strand 8
C
240 242parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il