Analysis of interatomic Contacts of Structural Units in PDB entry:
3DGZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DGZ entry

There is 1 chain in PDB entry 3DGZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4THR 485
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3DGZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 28Right-handed alpha
Helix 2
2
A
51 57Right-handed alpha
Helix 3
3
A
57 80Right-handed alpha
Helix 4
4
A
91 117Right-handed alpha
Helix 5
5
A
167 172Right-handed alpha
Helix 6
6
A
174 179Right-handed alpha
Helix 7
7
A
194 207Right-handed alpha
Helix 8
8
A
224 238Right-handed alpha
Helix 9
9
A
289 298Right-handed 310
Helix 10
10
A
325 328Right-handed 310
Helix 11
11
A
334 351Right-handed alpha
Helix 12
12
A
378 387Right-handed alpha
Helix 13
13
A
400 406Right-handed alpha
Helix 14
14
A
436 450Right-handed alpha
Helix 15
15
A
453 459Right-handed alpha
Helix 16
16
A
468 473Right-handed alpha
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There are 6 sheets in PDB entry 3DGZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 122first strand
Strand 2
A
32 35parallel
Strand 3
A
6 12parallel
Strand 4
A
143 153parallel
Strand 5
A
133 137anti-parallel
Strand 6
A
125 128anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 122first strand
Strand 2
A
32 35parallel
Strand 3
A
6 12parallel
Strand 4
A
143 153parallel
Strand 5
A
321 323parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
285 287anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 244first strand
Strand 2
A
211 215parallel
Strand 3
A
188 191parallel
Strand 4
A
278 281parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 253first strand
Strand 2
A
259 265anti-parallel
Strand 3
A
271 276anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 366first strand
Strand 2
A
371 376anti-parallel
Strand 3
A
427 434anti-parallel
Strand 4
A
414 420anti-parallel
Strand 5
A
391 397anti-parallel
Strand 6
A
476 477anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il