Analysis of interatomic Contacts of Structural Units in PDB entry:
3DH7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DH7 entry

There are 4 chains in PDB entry 3DH7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 9VAL 332
B
 LYS 9VAL 332
C
 LYS 9VAL 332
D
 LYS 9VAL 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 3DH7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 17Right-handed alpha
Helix 2
2
A
27 29Right-handed 310
Helix 3
3
A
42 46Right-handed 310
Helix 4
4
A
75 88Right-handed alpha
Helix 5
5
A
98 102Right-handed 310
Helix 6
6
A
125 131Right-handed 310
Helix 7
7
A
133 145Right-handed alpha
Helix 8
8
A
154 161Right-handed alpha
Helix 9
9
A
169 177Right-handed alpha
Helix 10
10
A
194 202Right-handed alpha
Helix 11
11
A
218 229Right-handed alpha
Helix 12
12
A
233 238Right-handed alpha
Helix 13
13
A
242 252Right-handed alpha
Helix 14
14
A
267 277Right-handed alpha
Helix 15
15
A
285 287Right-handed 310
Helix 16
16
A
288 294Right-handed alpha
Helix 17
17
A
295 318Right-handed alpha
Helix 18
18
A
322 326Right-handed 310
Helix 19
19
B
9 17Right-handed alpha
Helix 20
20
B
27 29Right-handed 310
Helix 21
21
B
42 46Right-handed 310
Helix 22
22
B
75 88Right-handed alpha
Helix 23
23
B
96 102Right-handed alpha
Helix 24
24
B
108 114Right-handed 310
Helix 25
25
B
125 131Right-handed 310
Helix 26
26
B
133 145Right-handed alpha
Helix 27
27
B
154 162Right-handed alpha
Helix 28
28
B
169 177Right-handed alpha
Helix 29
29
B
194 202Right-handed alpha
Helix 30
30
B
218 227Right-handed alpha
Helix 31
31
B
235 239Right-handed 310
Helix 32
32
B
242 254Right-handed alpha
Helix 33
33
B
267 277Right-handed alpha
Helix 34
34
B
285 295Right-handed alpha
Helix 35
35
B
296 317Right-handed alpha
Helix 36
36
B
321 326Right-handed 310
Helix 37
37
C
9 17Right-handed alpha
Helix 38
38
C
27 29Right-handed 310
Helix 39
39
C
42 46Right-handed 310
Helix 40
40
C
75 88Right-handed alpha
Helix 41
41
C
97 102Right-handed 310
Helix 42
42
C
125 130Right-handed 310
Helix 43
43
C
133 145Right-handed alpha
Helix 44
44
C
154 161Right-handed alpha
Helix 45
45
C
169 177Right-handed alpha
Helix 46
46
C
194 201Right-handed alpha
Helix 47
47
C
218 229Right-handed alpha
Helix 48
48
C
233 238Right-handed alpha
Helix 49
49
C
242 254Right-handed alpha
Helix 50
50
C
267 277Right-handed alpha
Helix 51
51
C
285 293Right-handed alpha
Helix 52
52
C
295 318Right-handed alpha
Helix 53
53
C
321 326Right-handed 310
Helix 54
54
D
9 17Right-handed alpha
Helix 55
55
D
27 29Right-handed 310
Helix 56
56
D
42 46Right-handed 310
Helix 57
57
D
75 88Right-handed alpha
Helix 58
58
D
96 102Right-handed alpha
Helix 59
59
D
125 131Right-handed 310
Helix 60
60
D
133 145Right-handed alpha
Helix 61
61
D
154 161Right-handed alpha
Helix 62
62
D
169 178Right-handed alpha
Helix 63
63
D
194 202Right-handed alpha
Helix 64
64
D
218 229Right-handed alpha
Helix 65
65
D
235 239Right-handed 310
Helix 66
66
D
242 254Right-handed alpha
Helix 67
67
D
267 278Right-handed alpha
Helix 68
68
D
285 287Right-handed 310
Helix 69
69
D
288 295Right-handed alpha
Helix 70
70
D
296 317Right-handed alpha
Helix 71
71
D
321 326Right-handed 310
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There are 10 sheets in PDB entry 3DH7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
329 331anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
55 57anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
90 95parallel
Strand 3
A
120 123parallel
Strand 4
A
148 152parallel
Strand 5
A
184 187parallel
Strand 6
A
208 210parallel
Strand 7
A
259 262parallel
Strand 8
A
281 284parallel
Strand 9
A
61 63parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 33first strand
Strand 2
B
329 331anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
90 92parallel
Strand 3
B
119 123parallel
Strand 4
B
148 152parallel
Strand 5
B
184 187parallel
Strand 6
B
208 210parallel
Strand 7
B
259 262parallel
Strand 8
B
281 284parallel
Strand 9
B
61 63parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 33first strand
Strand 2
C
329 331anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 52first strand
Strand 2
C
55 57anti-parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 63first strand
Strand 2
C
90 95parallel
Strand 3
C
119 123parallel
Strand 4
C
148 152parallel
Strand 5
C
184 187parallel
Strand 6
C
208 210parallel
Strand 7
C
259 262parallel
Strand 8
C
281 284parallel
Strand 9
C
61 63parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
31 33first strand
Strand 2
D
329 331anti-parallel
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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
61 63first strand
Strand 2
D
90 95parallel
Strand 3
D
119 123parallel
Strand 4
D
148 152parallel
Strand 5
D
184 187parallel
Strand 6
D
208 210parallel
Strand 7
D
259 262parallel
Strand 8
D
281 284parallel
Strand 9
D
61 63parallel
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