Analysis of interatomic Contacts of Structural Units in PDB entry:
3DH8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DH8 entry

There is 1 chain in PDB entry 3DH8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 900ALA 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3DH8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 43Right-handed 310
Helix 2
2
A
44 56Right-handed alpha
Helix 3
3
A
58 60Right-handed 310
Helix 4
4
A
77 82Right-handed alpha
Helix 5
5
A
83 85Right-handed 310
Helix 6
6
A
94 101Right-handed alpha
Helix 7
7
A
102 115Right-handed alpha
Helix 8
8
A
128 132Right-handed 310
Helix 9
9
A
169 171Right-handed 310
Helix 10
10
A
197 210Right-handed alpha
Helix 11
11
A
227 232Right-handed alpha
Helix 12
12
A
232 254Right-handed alpha
Helix 13
13
A
257 270Right-handed alpha
Helix 14
14
A
278 296Right-handed alpha
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There are 3 sheets in PDB entry 3DH8. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
224 226anti-parallel
Strand 3
A
216 219anti-parallel
Strand 4
A
173 177parallel
Strand 5
A
164 168anti-parallel
Strand 6
A
149 155anti-parallel
Strand 7
A
142 146anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 11first strand
Strand 2
A
14 17anti-parallel
Strand 3
A
24 30anti-parallel
Strand 4
A
33 37anti-parallel
Strand 5
A
62 66parallel
Strand 6
A
89 93parallel
Strand 7
A
134 137parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 184first strand
Strand 2
A
189 191anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il