Analysis of interatomic Contacts of Structural Units in PDB entry:
3DH9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DH9 entry

There are 2 chains in PDB entry 3DH9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 5PRO 486
B
 GLN 5PRO 486
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 3DH9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 31Right-handed alpha
Helix 2
2
A
54 61Right-handed alpha
Helix 3
3
A
61 82Right-handed alpha
Helix 4
4
A
83 85Right-handed 310
Helix 5
5
A
95 121Right-handed alpha
Helix 6
6
A
169 174Right-handed alpha
Helix 7
7
A
176 181Right-handed alpha
Helix 8
8
A
196 209Right-handed alpha
Helix 9
9
A
226 240Right-handed alpha
Helix 10
10
A
291 294Right-handed 310
Helix 11
11
A
295 300Right-handed alpha
Helix 12
12
A
325 328Right-handed 310
Helix 13
13
A
334 351Right-handed alpha
Helix 14
14
A
378 387Right-handed alpha
Helix 15
15
A
400 404Right-handed 310
Helix 16
16
A
436 450Right-handed alpha
Helix 17
17
A
453 460Right-handed alpha
Helix 18
18
A
467 472Right-handed 310
Helix 19
19
B
18 31Right-handed alpha
Helix 20
20
B
54 61Right-handed alpha
Helix 21
21
B
61 82Right-handed alpha
Helix 22
22
B
83 85Right-handed 310
Helix 23
23
B
95 121Right-handed alpha
Helix 24
24
B
169 174Right-handed alpha
Helix 25
25
B
176 181Right-handed alpha
Helix 26
26
B
196 209Right-handed alpha
Helix 27
27
B
226 240Right-handed alpha
Helix 28
28
B
291 294Right-handed 310
Helix 29
29
B
295 300Right-handed alpha
Helix 30
30
B
334 351Right-handed alpha
Helix 31
31
B
378 387Right-handed alpha
Helix 32
32
B
400 404Right-handed 310
Helix 33
33
B
436 450Right-handed alpha
Helix 34
34
B
453 460Right-handed alpha
Helix 35
35
B
469 474Right-handed alpha
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There are 12 sheets in PDB entry 3DH9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 126first strand
Strand 2
A
35 38parallel
Strand 3
A
10 15parallel
Strand 4
A
145 156parallel
Strand 5
A
137 142anti-parallel
Strand 6
A
128 134anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 126first strand
Strand 2
A
35 38parallel
Strand 3
A
10 15parallel
Strand 4
A
145 156parallel
Strand 5
A
321 323parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
287 289anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 245first strand
Strand 2
A
212 216parallel
Strand 3
A
189 193parallel
Strand 4
A
280 283parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 255first strand
Strand 2
A
261 267anti-parallel
Strand 3
A
273 278anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 366first strand
Strand 2
A
371 376anti-parallel
Strand 3
A
427 434anti-parallel
Strand 4
A
414 420anti-parallel
Strand 5
A
391 397anti-parallel
Strand 6
A
476 477anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 126first strand
Strand 2
B
35 38parallel
Strand 3
B
10 15parallel
Strand 4
B
149 156parallel
Strand 5
B
137 141anti-parallel
Strand 6
B
129 134anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 126first strand
Strand 2
B
35 38parallel
Strand 3
B
10 15parallel
Strand 4
B
149 156parallel
Strand 5
B
321 323parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 162first strand
Strand 2
B
287 289anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 245first strand
Strand 2
B
212 216parallel
Strand 3
B
189 193parallel
Strand 4
B
280 283parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 255first strand
Strand 2
B
261 267anti-parallel
Strand 3
B
273 278anti-parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
364 366first strand
Strand 2
B
371 376anti-parallel
Strand 3
B
427 434anti-parallel
Strand 4
B
414 420anti-parallel
Strand 5
B
391 397anti-parallel
Strand 6
B
476 477anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il