Analysis of interatomic Contacts of Structural Units in PDB entry:
3DHN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DHN entry

There is 1 chain in PDB entry 3DHN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3HIS 224
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3DHN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 26Right-handed alpha
Helix 2
2
A
37 41Right-handed 310
Helix 3
3
A
57 66Right-handed alpha
Helix 4
4
A
86 102Right-handed alpha
Helix 5
5
A
125 127Right-handed 310
Helix 6
6
A
131 133Right-handed 310
Helix 7
7
A
134 148Right-handed alpha
Helix 8
8
A
149 152Right-handed 310
Helix 9
9
A
194 207Right-handed alpha
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There are 3 sheets in PDB entry 3DHN. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
30 34parallel
Strand 3
A
6 10parallel
Strand 4
A
70 73parallel
Strand 5
A
106 110parallel
Strand 6
A
156 161parallel
Strand 7
A
213 218parallel
Strand 8
A
176 178anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 119first strand
Strand 2
A
122 123anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 167first strand
Strand 2
A
191 193parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il