Analysis of interatomic Contacts of Structural Units in PDB entry:
3DI0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DI0 entry

There are 2 chains in PDB entry 3DI0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2GLY 292
B
 THR 2GLU 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3DI0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 36Right-handed alpha
Helix 2
2
A
49 53Right-handed 310
Helix 3
3
A
54 70Right-handed alpha
Helix 4
4
A
83 98Right-handed alpha
Helix 5
5
A
113 129Right-handed alpha
Helix 6
6
A
137 142Right-handed alpha
Helix 7
7
A
146 155Right-handed alpha
Helix 8
8
A
168 177Right-handed alpha
Helix 9
9
A
190 192Right-handed 310
Helix 10
10
A
193 200Right-handed alpha
Helix 11
11
A
208 212Right-handed 310
Helix 12
12
A
213 226Right-handed alpha
Helix 13
13
A
234 245Right-handed alpha
Helix 14
14
A
252 260Right-handed alpha
Helix 15
15
A
275 291Right-handed alpha
Helix 16
16
B
22 36Right-handed alpha
Helix 17
17
B
45 53Right-handed 310
Helix 18
18
B
54 70Right-handed alpha
Helix 19
19
B
83 98Right-handed alpha
Helix 20
20
B
113 129Right-handed alpha
Helix 21
21
B
137 142Right-handed alpha
Helix 22
22
B
146 156Right-handed alpha
Helix 23
23
B
168 177Right-handed alpha
Helix 24
24
B
190 192Right-handed 310
Helix 25
25
B
193 200Right-handed alpha
Helix 26
26
B
208 212Right-handed 310
Helix 27
27
B
213 226Right-handed alpha
Helix 28
28
B
234 245Right-handed alpha
Helix 29
29
B
252 260Right-handed alpha
Helix 30
30
B
275 292Right-handed alpha
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There are 3 sheets in PDB entry 3DI0. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 11first strand
Strand 2
A
40 43parallel
Strand 3
A
75 78parallel
Strand 4
A
101 105parallel
Strand 5
A
132 136parallel
Strand 6
A
159 164parallel
Strand 7
A
185 188parallel
Strand 8
A
204 207parallel
Strand 9
A
7 11parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
20 21anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 11first strand
Strand 2
B
40 43parallel
Strand 3
B
75 78parallel
Strand 4
B
101 105parallel
Strand 5
B
132 136parallel
Strand 6
B
159 164parallel
Strand 7
B
185 188parallel
Strand 8
B
204 207parallel
Strand 9
B
7 11parallel
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