Analysis of interatomic Contacts of Structural Units in PDB entry:
3DIN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DIN entry

There are 8 chains in PDB entry 3DIN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 816
C
 ALA 8LYS 423
D
 GLU 10GLY 65
E
 HIS 9VAL 73
B
 MET 1VAL 816
F
 ALA 8LYS 423
G
 GLU 10GLY 65
H
 HIS 9VAL 73
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 98 helices in PDB entry 3DIN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 27Right-handed alpha
Helix 2
2
A
33 45Right-handed alpha
Helix 3
3
A
53 72Right-handed alpha
Helix 4
4
A
80 90Right-handed alpha
Helix 5
5
A
100 114Right-handed alpha
Helix 6
6
A
125 136Right-handed alpha
Helix 7
7
A
136 143Right-handed alpha
Helix 8
8
A
165 176Right-handed alpha
Helix 9
9
A
191 199Right-handed alpha
Helix 10
10
A
200 202Right-handed 310
Helix 11
11
A
208 215Right-handed alpha
Helix 12
12
A
222 232Right-handed alpha
Helix 13
13
A
253 258Right-handed alpha
Helix 14
14
A
274 291Right-handed alpha
Helix 15
15
A
307 317Right-handed alpha
Helix 16
16
A
328 345Right-handed alpha
Helix 17
17
A
377 386Right-handed alpha
Helix 18
18
A
405 409Right-handed 310
Helix 19
19
A
419 429Right-handed alpha
Helix 20
20
A
457 473Right-handed alpha
Helix 21
21
A
483 497Right-handed alpha
Helix 22
22
A
508 519Right-handed alpha
Helix 23
23
A
531 533Right-handed 310
Helix 24
24
A
543 547Right-handed 310
Helix 25
25
A
560 570Right-handed alpha
Helix 26
26
A
595 605Right-handed alpha
Helix 27
27
A
618 665Right-handed alpha
Helix 28
28
A
668 684Right-handed alpha
Helix 29
29
A
692 703Right-handed alpha
Helix 30
30
A
721 740Right-handed alpha
Helix 31
31
A
741 745Right-handed 310
Helix 32
32
A
746 776Right-handed alpha
Helix 33
33
A
787 813Right-handed alpha
Helix 34
34
C
16 33Right-handed alpha
Helix 35
35
C
64 69Right-handed alpha
Helix 36
36
C
81 99Right-handed alpha
Helix 37
37
C
110 143Right-handed alpha
Helix 38
38
C
154 179Right-handed alpha
Helix 39
39
C
185 199Right-handed alpha
Helix 40
40
C
213 231Right-handed alpha
Helix 41
41
C
271 287Right-handed alpha
Helix 42
42
C
302 323Right-handed alpha
Helix 43
43
C
326 332Right-handed alpha
Helix 44
44
C
349 381Right-handed alpha
Helix 45
45
C
391 413Right-handed alpha
Helix 46
46
D
10 23Right-handed alpha
Helix 47
47
D
29 65Right-handed alpha
Helix 48
48
E
9 31Right-handed alpha
Helix 49
49
E
53 72Right-handed alpha
Helix 50
50
B
3 27Right-handed alpha
Helix 51
51
B
33 45Right-handed alpha
Helix 52
52
B
53 72Right-handed alpha
Helix 53
53
B
80 90Right-handed alpha
Helix 54
54
B
100 114Right-handed alpha
Helix 55
55
B
125 136Right-handed alpha
Helix 56
56
B
136 143Right-handed alpha
Helix 57
57
B
165 176Right-handed alpha
Helix 58
58
B
191 199Right-handed alpha
Helix 59
59
B
200 202Right-handed 310
Helix 60
60
B
208 215Right-handed alpha
Helix 61
61
B
222 232Right-handed alpha
Helix 62
62
B
253 258Right-handed alpha
Helix 63
63
B
274 291Right-handed alpha
Helix 64
64
B
307 317Right-handed alpha
Helix 65
65
B
328 345Right-handed alpha
Helix 66
66
B
377 386Right-handed alpha
Helix 67
67
B
405 409Right-handed 310
Helix 68
68
B
419 429Right-handed alpha
Helix 69
69
B
457 473Right-handed alpha
Helix 70
70
B
483 497Right-handed alpha
Helix 71
71
B
508 519Right-handed alpha
Helix 72
72
B
531 533Right-handed 310
Helix 73
73
B
543 547Right-handed 310
Helix 74
74
B
560 570Right-handed alpha
Helix 75
75
B
595 605Right-handed alpha
Helix 76
76
B
618 665Right-handed alpha
Helix 77
77
B
668 684Right-handed alpha
Helix 78
78
B
692 703Right-handed alpha
Helix 79
79
B
721 740Right-handed alpha
Helix 80
80
B
741 745Right-handed 310
Helix 81
81
B
746 776Right-handed alpha
Helix 82
82
B
787 813Right-handed alpha
Helix 83
83
F
16 33Right-handed alpha
Helix 84
84
F
64 69Right-handed alpha
Helix 85
85
F
81 99Right-handed alpha
Helix 86
86
F
110 143Right-handed alpha
Helix 87
87
F
154 179Right-handed alpha
Helix 88
88
F
185 199Right-handed alpha
Helix 89
89
F
213 231Right-handed alpha
Helix 90
90
F
271 287Right-handed alpha
Helix 91
91
F
302 323Right-handed alpha
Helix 92
92
F
326 332Right-handed alpha
Helix 93
93
F
349 381Right-handed alpha
Helix 94
94
F
391 413Right-handed alpha
Helix 95
95
G
10 23Right-handed alpha
Helix 96
96
G
29 65Right-handed alpha
Helix 97
97
H
9 31Right-handed alpha
Helix 98
98
H
53 72Right-handed alpha
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There are 8 sheets in PDB entry 3DIN. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
412 415parallel
Strand 3
A
249 252parallel
Strand 4
A
119 123parallel
Strand 5
A
217 221parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
A
155 156anti-parallel
Strand 3
A
206 207anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
396 397anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 453first strand
Strand 2
A
579 585parallel
Strand 3
A
551 554parallel
Strand 4
A
477 481parallel
Strand 5
A
525 529parallel
Strand 6
A
502 504parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 93first strand
Strand 2
B
412 415parallel
Strand 3
B
249 252parallel
Strand 4
B
119 123parallel
Strand 5
B
217 221parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
155 156anti-parallel
Strand 3
B
206 207anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 267first strand
Strand 2
B
396 397anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
446 453first strand
Strand 2
B
579 585parallel
Strand 3
B
551 554parallel
Strand 4
B
477 481parallel
Strand 5
B
525 529parallel
Strand 6
B
502 504parallel
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