Analysis of interatomic Contacts of Structural Units in PDB entry:
3DIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DIP entry

There are 4 chains in PDB entry 3DIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1HIS 320
A
 THR 323ARG 401
B
 LEU 1HIS 320
B
 THR 323ARG 401
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 3DIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 49Right-handed alpha
Helix 2
2
A
49 55Right-handed alpha
Helix 3
3
A
61 70Right-handed alpha
Helix 4
4
A
80 102Right-handed alpha
Helix 5
5
A
104 109Right-handed alpha
Helix 6
6
A
157 168Right-handed alpha
Helix 7
7
A
178 183Right-handed alpha
Helix 8
8
A
190 209Right-handed alpha
Helix 9
9
A
223 234Right-handed alpha
Helix 10
10
A
235 238Right-handed 310
Helix 11
11
A
251 263Right-handed alpha
Helix 12
12
A
274 284Right-handed alpha
Helix 13
13
A
299 313Right-handed alpha
Helix 14
14
A
324 338Right-handed alpha
Helix 15
15
A
354 359Right-handed alpha
Helix 16
16
A
385 389Right-handed 310
Helix 17
17
B
38 49Right-handed alpha
Helix 18
18
B
49 55Right-handed alpha
Helix 19
19
B
61 70Right-handed alpha
Helix 20
20
B
80 102Right-handed alpha
Helix 21
21
B
104 110Right-handed alpha
Helix 22
22
B
157 168Right-handed alpha
Helix 23
23
B
178 184Right-handed 310
Helix 24
24
B
190 209Right-handed alpha
Helix 25
25
B
210 212Right-handed 310
Helix 26
26
B
223 234Right-handed alpha
Helix 27
27
B
235 238Right-handed 310
Helix 28
28
B
251 263Right-handed alpha
Helix 29
29
B
273 284Right-handed alpha
Helix 30
30
B
299 314Right-handed alpha
Helix 31
31
B
324 338Right-handed alpha
Helix 32
32
B
354 358Right-handed 310
Helix 33
33
B
383 389Right-handed 310
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There are 6 sheets in PDB entry 3DIP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 36first strand
Strand 2
A
15 25anti-parallel
Strand 3
A
4 12anti-parallel
Strand 4
A
393 398anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 347first strand
Strand 2
A
116 123parallel
Strand 3
A
369 371anti-parallel
Strand 4
A
365 366anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 175first strand
Strand 2
A
213 217parallel
Strand 3
A
241 243parallel
Strand 4
A
266 268parallel
Strand 5
A
289 292parallel
Strand 6
A
317 319parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 36first strand
Strand 2
B
15 25anti-parallel
Strand 3
B
4 12anti-parallel
Strand 4
B
393 398anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 319first strand
Strand 2
B
289 292parallel
Strand 3
B
266 268parallel
Strand 4
B
241 243parallel
Strand 5
B
213 217parallel
Strand 6
B
172 175parallel
Strand 7
B
116 121parallel
Strand 8
B
344 346parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 319first strand
Strand 2
B
289 292parallel
Strand 3
B
266 268parallel
Strand 4
B
241 243parallel
Strand 5
B
213 217parallel
Strand 6
B
172 175parallel
Strand 7
B
116 121parallel
Strand 8
B
369 371anti-parallel
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