Analysis of interatomic Contacts of Structural Units in PDB entry:
3DIW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DIW entry

There are 4 chains in PDB entry 3DIW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 8GLN 115
B
 ALA 11LYS 116
C
 GLN 773LEU 781
D
 GLN 773LEU 781
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 3DIW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 44Right-handed 310
Helix 2
2
A
64 70Right-handed alpha
Helix 3
3
A
89 98Right-handed alpha
Helix 4
4
B
40 44Right-handed 310
Helix 5
5
B
64 70Right-handed alpha
Helix 6
6
B
89 98Right-handed alpha
Helix 7
7
B
111 115Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 3DIW. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
76 80anti-parallel
Strand 3
A
104 113anti-parallel
Strand 4
A
11 19anti-parallel
Strand 5
B
12 19parallel
Strand 6
B
104 110anti-parallel
Strand 7
B
76 80anti-parallel
Strand 8
A
55 60first strand
Strand 9
A
31 35anti-parallel
Strand 10
C
778 780anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 84first strand
Strand 2
B
76 80anti-parallel
Strand 3
B
104 110anti-parallel
Strand 4
B
12 19anti-parallel
Strand 5
A
11 19parallel
Strand 6
A
104 113anti-parallel
Strand 7
A
76 80anti-parallel
Strand 8
B
55 60first strand
Strand 9
B
31 35anti-parallel
Strand 10
D
778 780anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
26 28anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 23first strand
Strand 2
B
26 28anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il