Analysis of interatomic Contacts of Structural Units in PDB entry:
3DJC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3DJC entry

There are 12 chains in PDB entry 3DJC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 1	THR 255
B	SER 0	THR 255
C	LEU 1	ALA 256
D	SER 0	ALA 256
E	LEU 1	ALA 256
F	LEU 1	ALA 256
G	SER 0	THR 255
H	LEU 1	THR 255
I	LEU 1	THR 255
J	LEU 1	THR 255
K	LEU 1	THR 255
L	LEU 1	THR 255

There are 97 helices in PDB entry 3DJC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	34	48	Right-handed alpha
Helix 2	2	A	52	56	Right-handed 310
Helix 3	3	A	65	80	Right-handed alpha
Helix 4	4	A	101	105	Right-handed 310
Helix 5	5	A	106	120	Right-handed alpha
Helix 6	6	A	153	164	Right-handed alpha
Helix 7	7	A	183	211	Right-handed alpha
Helix 8	8	A	225	230	Right-handed 310
Helix 9	9	A	241	253	Right-handed alpha
Helix 10	10	B	34	49	Right-handed alpha
Helix 11	11	B	52	56	Right-handed 310
Helix 12	12	B	65	80	Right-handed alpha
Helix 13	13	B	106	120	Right-handed alpha
Helix 14	14	B	153	164	Right-handed alpha
Helix 15	15	B	183	211	Right-handed alpha
Helix 16	16	B	225	230	Right-handed 310
Helix 17	17	B	241	254	Right-handed alpha
Helix 18	18	C	34	49	Right-handed alpha
Helix 19	19	C	52	56	Right-handed 310
Helix 20	20	C	68	80	Right-handed alpha
Helix 21	21	C	106	120	Right-handed alpha
Helix 22	22	C	153	164	Right-handed alpha
Helix 23	23	C	183	211	Right-handed alpha
Helix 24	24	C	225	230	Right-handed 310
Helix 25	25	C	241	253	Right-handed alpha
Helix 26	26	D	34	48	Right-handed alpha
Helix 27	27	D	52	56	Right-handed 310
Helix 28	28	D	65	80	Right-handed alpha
Helix 29	29	D	101	105	Right-handed 310
Helix 30	30	D	106	120	Right-handed alpha
Helix 31	31	D	153	163	Right-handed alpha
Helix 32	32	D	183	211	Right-handed alpha
Helix 33	33	D	225	230	Right-handed 310
Helix 34	34	D	241	254	Right-handed alpha
Helix 35	35	E	34	48	Right-handed alpha
Helix 36	36	E	52	56	Right-handed 310
Helix 37	37	E	65	67	Right-handed 310
Helix 38	38	E	68	80	Right-handed alpha
Helix 39	39	E	106	120	Right-handed alpha
Helix 40	40	E	153	164	Right-handed alpha
Helix 41	41	E	183	211	Right-handed alpha
Helix 42	42	E	225	230	Right-handed 310
Helix 43	43	E	241	253	Right-handed alpha
Helix 44	44	F	34	48	Right-handed alpha
Helix 45	45	F	65	81	Right-handed alpha
Helix 46	46	F	106	120	Right-handed alpha
Helix 47	47	F	153	161	Right-handed alpha
Helix 48	48	F	183	211	Right-handed alpha
Helix 49	49	F	225	230	Right-handed 310
Helix 50	50	F	241	254	Right-handed alpha
Helix 51	51	G	36	48	Right-handed alpha
Helix 52	52	G	52	54	Right-handed 310
Helix 53	53	G	65	67	Right-handed 310
Helix 54	54	G	68	80	Right-handed alpha
Helix 55	55	G	106	120	Right-handed alpha
Helix 56	56	G	153	164	Right-handed alpha
Helix 57	57	G	183	211	Right-handed alpha
Helix 58	58	G	225	229	Right-handed 310
Helix 59	59	G	241	252	Right-handed alpha
Helix 60	60	H	34	48	Right-handed alpha
Helix 61	61	H	52	56	Right-handed 310
Helix 62	62	H	65	80	Right-handed alpha
Helix 63	63	H	106	120	Right-handed alpha
Helix 64	64	H	153	164	Right-handed alpha
Helix 65	65	H	183	211	Right-handed alpha
Helix 66	66	H	225	230	Right-handed 310
Helix 67	67	H	241	255	Right-handed alpha
Helix 68	68	I	36	49	Right-handed alpha
Helix 69	69	I	68	80	Right-handed alpha
Helix 70	70	I	106	120	Right-handed alpha
Helix 71	71	I	155	164	Right-handed alpha
Helix 72	72	I	183	209	Right-handed alpha
Helix 73	73	I	225	230	Right-handed 310
Helix 74	74	I	241	254	Right-handed alpha
Helix 75	75	J	34	48	Right-handed alpha
Helix 76	76	J	68	80	Right-handed alpha
Helix 77	77	J	101	105	Right-handed 310
Helix 78	78	J	106	120	Right-handed alpha
Helix 79	79	J	153	163	Right-handed alpha
Helix 80	80	J	183	211	Right-handed alpha
Helix 81	81	J	223	230	Right-handed 310
Helix 82	82	J	241	254	Right-handed alpha
Helix 83	83	K	34	48	Right-handed alpha
Helix 84	84	K	52	56	Right-handed 310
Helix 85	85	K	68	80	Right-handed alpha
Helix 86	86	K	106	120	Right-handed alpha
Helix 87	87	K	153	164	Right-handed alpha
Helix 88	88	K	183	211	Right-handed alpha
Helix 89	89	K	226	230	Right-handed 310
Helix 90	90	K	241	254	Right-handed alpha
Helix 91	91	L	34	48	Right-handed alpha
Helix 92	92	L	68	80	Right-handed alpha
Helix 93	93	L	106	120	Right-handed alpha
Helix 94	94	L	153	165	Right-handed alpha
Helix 95	95	L	183	211	Right-handed alpha
Helix 96	96	L	226	230	Right-handed 310
Helix 97	97	L	241	253	Right-handed alpha

There are 24 sheets in PDB entry 3DJC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	29	first strand
Strand 2	A	11	18	anti-parallel
Strand 3	A	2	7	anti-parallel
Strand 4	A	58	62	parallel
Strand 5	A	85	86	parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	97	first strand
Strand 2	A	144	152	parallel
Strand 3	A	133	139	anti-parallel
Strand 4	A	124	130	anti-parallel
Strand 5	A	217	222	parallel
Strand 6	A	237	238	parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	28	first strand
Strand 2	B	12	18	anti-parallel
Strand 3	B	1	7	anti-parallel
Strand 4	B	58	63	parallel
Strand 5	B	85	86	parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	97	first strand
Strand 2	B	144	152	parallel
Strand 3	B	133	139	anti-parallel
Strand 4	B	124	130	anti-parallel
Strand 5	B	217	222	parallel
Strand 6	B	237	238	parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	29	first strand
Strand 2	C	11	18	anti-parallel
Strand 3	C	2	7	anti-parallel
Strand 4	C	58	63	parallel
Strand 5	C	85	86	parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	144	152	parallel
Strand 3	C	133	139	anti-parallel
Strand 4	C	124	130	anti-parallel
Strand 5	C	217	223	parallel
Strand 6	C	237	238	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	29	first strand
Strand 2	D	11	18	anti-parallel
Strand 3	D	2	7	anti-parallel
Strand 4	D	58	63	parallel
Strand 5	D	85	86	parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	97	first strand
Strand 2	D	144	152	parallel
Strand 3	D	133	140	anti-parallel
Strand 4	D	124	130	anti-parallel
Strand 5	D	217	223	parallel
Strand 6	D	237	238	parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	29	first strand
Strand 2	E	11	18	anti-parallel
Strand 3	E	2	7	anti-parallel
Strand 4	E	58	63	parallel
Strand 5	E	85	87	parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	97	first strand
Strand 2	E	144	152	parallel
Strand 3	E	133	139	anti-parallel
Strand 4	E	125	130	anti-parallel
Strand 5	E	218	222	parallel
Strand 6	E	237	238	parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	21	29	first strand
Strand 2	F	11	18	anti-parallel
Strand 3	F	2	7	anti-parallel
Strand 4	F	58	63	parallel
Strand 5	F	85	87	parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	96	97	first strand
Strand 2	F	144	150	parallel
Strand 3	F	134	139	anti-parallel
Strand 4	F	124	130	anti-parallel
Strand 5	F	217	222	parallel
Strand 6	F	237	238	parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	22	29	first strand
Strand 2	G	11	18	anti-parallel
Strand 3	G	1	7	anti-parallel
Strand 4	G	56	63	parallel
Strand 5	G	85	86	parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	145	152	first strand
Strand 2	G	133	139	anti-parallel
Strand 3	G	124	130	anti-parallel
Strand 4	G	217	222	parallel
Strand 5	G	237	238	parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	21	29	first strand
Strand 2	H	11	18	anti-parallel
Strand 3	H	2	7	anti-parallel
Strand 4	H	58	63	parallel
Strand 5	H	85	86	parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	96	97	first strand
Strand 2	H	144	152	parallel
Strand 3	H	133	139	anti-parallel
Strand 4	H	124	130	anti-parallel
Strand 5	H	217	223	parallel
Strand 6	H	237	238	parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	21	29	first strand
Strand 2	I	11	18	anti-parallel
Strand 3	I	2	7	anti-parallel
Strand 4	I	58	63	parallel
Strand 5	I	85	87	parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	96	97	first strand
Strand 2	I	144	152	parallel
Strand 3	I	133	139	anti-parallel
Strand 4	I	124	130	anti-parallel
Strand 5	I	217	222	parallel
Strand 6	I	237	238	parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	21	29	first strand
Strand 2	J	11	18	anti-parallel
Strand 3	J	2	7	anti-parallel
Strand 4	J	58	63	parallel
Strand 5	J	85	86	parallel

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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	96	97	first strand
Strand 2	J	144	152	parallel
Strand 3	J	133	139	anti-parallel
Strand 4	J	125	130	anti-parallel
Strand 5	J	218	222	parallel
Strand 6	J	237	238	parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	21	29	first strand
Strand 2	K	11	18	anti-parallel
Strand 3	K	2	7	anti-parallel
Strand 4	K	58	63	parallel
Strand 5	K	85	86	parallel

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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	96	97	first strand
Strand 2	K	144	152	parallel
Strand 3	K	133	139	anti-parallel
Strand 4	K	124	130	anti-parallel
Strand 5	K	217	222	parallel
Strand 6	K	237	238	parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	21	29	first strand
Strand 2	L	11	18	anti-parallel
Strand 3	L	2	7	anti-parallel
Strand 4	L	58	63	parallel
Strand 5	L	85	87	parallel

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There are 6 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	96	97	first strand
Strand 2	L	144	152	parallel
Strand 3	L	133	139	anti-parallel
Strand 4	L	124	130	anti-parallel
Strand 5	L	217	223	parallel
Strand 6	L	237	238	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3DJC

Analysis of interatomic Contacts of Structural Units in PDB entry:
3DJC