Analysis of interatomic Contacts of Structural Units in PDB entry:
3DJL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DJL entry

There is 1 chain in PDB entry 3DJL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 3CYS 540
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3DJL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 34Right-handed alpha
Helix 2
2
A
36 38Right-handed 310
Helix 3
3
A
39 51Right-handed alpha
Helix 4
4
A
52 65Right-handed alpha
Helix 5
5
A
85 98Right-handed alpha
Helix 6
6
A
102 106Right-handed 310
Helix 7
7
A
112 128Right-handed alpha
Helix 8
8
A
131 149Right-handed alpha
Helix 9
9
A
150 155Right-handed 310
Helix 10
10
A
156 161Right-handed alpha
Helix 11
11
A
171 175Right-handed 310
Helix 12
12
A
192 196Right-handed 310
Helix 13
13
A
286 291Right-handed alpha
Helix 14
14
A
291 324Right-handed alpha
Helix 15
15
A
334 364Right-handed alpha
Helix 16
16
A
367 401Right-handed alpha
Helix 17
17
A
402 406Right-handed 310
Helix 18
18
A
410 424Right-handed alpha
Helix 19
19
A
426 442Right-handed alpha
Helix 20
20
A
444 455Right-handed alpha
Helix 21
21
A
460 474Right-handed alpha
Helix 22
22
A
478 480Right-handed 310
Helix 23
23
A
481 502Right-handed alpha
Helix 24
24
A
503 516Right-handed alpha
Helix 25
25
A
524 535Right-handed alpha
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There are 4 sheets in PDB entry 3DJL. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 72first strand
Strand 2
A
78 83anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 183first strand
Strand 2
A
224 231parallel
Strand 3
A
199 202parallel
Strand 4
A
208 218anti-parallel
Strand 5
A
268 281anti-parallel
Strand 6
A
252 257anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 183first strand
Strand 2
A
224 231parallel
Strand 3
A
234 241anti-parallel
Strand 4
A
268 281anti-parallel
Strand 5
A
252 257anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
329 330anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il